Phocoena phocoena (harbor porpoise): 136142411
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Entry
136142411 CDS
T11058
Symbol
POLA1
Name
(RefSeq) DNA polymerase alpha catalytic subunit isoform X1
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136142411 (POLA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136142411 (POLA1)
Enzymes [BR:
pphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
136142411 (POLA1)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
136142411 (POLA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DUF1744
DNA_pol_B_2
MTR4_beta-barrel
PP-binding_2
Motif
Other DBs
NCBI-GeneID:
136142411
NCBI-ProteinID:
XP_065756563
LinkDB
All DBs
Position
X:20867891..21174531
Genome browser
AA seq
1468 aa
AA seq
DB search
MALVYGDDCDLGASAVSDSGSFVTSRSRREKKSKKGRQEALERLKRAKAGEKYKYEVEDF
TSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDHALDSHEKGQNNK
ACSKDKRNVKKAMVTKPNNIKSMFIASAGRKTADKAVDLSKDDLLGDILQDLNTETPQIT
PPPVIIPKKKGSSGASLNPFSMHTPKAAPSGKTTSPVSRKEPSLTPAPLKCAGFAGEPVL
ALRTVDQEESGAMDFEDGDFDEPMETEEVDVEPVGAKTSDQEREPAEGTKHEADPGKGTV
SYSASFLPDVSCWDIEQEDDSSFSALEVQVDSSHLPLVKGADEEQVFQFYWLDAYEDPYS
QPGVVFLFGKVWIEFAQTHVSCCVMVKNIERTLYFLPRETKIDLNTGKESGTPVTMKDVY
DEFDEKIAAKYKIMKFKSKAVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFS
HVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQPISWCKVEAMALKPDLVNVIKDVGP
PPLVVMSLSMKTMQNAKTHENEIIAVAALVHHSFALDKAPPRPPFHSHFCVVSKPKDCIF
PYDFKEGIKEKNVKVEVAATERTLLGFFLAKIHKIDPDIIVGHNIYGFELEVLLQRINVC
KVPYWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIRNMYSDSSYLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGN
IMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQLFRKPQQKPGDEDEDIDGDTNKYKKGR
KKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRRQVKQLMKQQDLNPDLVLQYDIRQKALKLTAN
SMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTN
LEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTVDGNYVTKQEV
KGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFE
INKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNLTGSQRAYA
PEQLQKQDNLSIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDATQFRVHHYHRD
EENDALLGGPAQLTDEEKYRDCERFKCPCPICGTENIYDSVFDGSGTDMEPSLYRCSNID
CKASPLTFMVQLSNKLIMDIRRCIKKYYEGWLICEEPTCRNRTRHLPLQFSRNGPLCQVC
MKATLRPEYSDKSLYTQLCFYRYIFDAECALEKLTTDHEKDKLKKQFFTPKVLQDYRKLK
NTAEQFLSQSGYSEVNLSKLFADCAVRS
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggtgtacggcgatgactgcgacctcggggcgagcgctgtgtcagattcaggg
agttttgtaacttctcgatcccggagagagaagaaatcaaagaaagggcgacaggaagct
ctggaaagactgaaaagggctaaagctggtgagaagtataaatatgaagtagaggacttc
acaagtgtttatgaagaagttgatgaggaacagtactcgaagctggtccaggcccgccag
gatgacgactggatcgtggatgatgatggtattggctatgtggaggacggccgagagatt
tttgatgatgaccttgaagatcatgcccttgactcccatgagaaaggacaaaataataaa
gcatgcagcaaagacaagaggaatgtcaagaaggccatggtgacaaaaccgaacaatatc
aagtcaatgttcattgccagtgctggaaggaaaaccgcagacaaagctgttgacttgtcc
aaggatgatctgctaggtgatattctacaggatttgaacactgagacacctcaaataact
ccaccacctgtaataataccgaagaagaaaggatccagtggagcttcactgaatcctttc
tctatgcacacccccaaggcagctccttcaggaaaaaccacttccccggtctcaaggaag
gagccttcgttaacccctgcccctcttaaatgtgctggatttgctggagagccggtgctg
gcattgcgtacagttgaccaggaggagtcaggggcaatggattttgaagatggcgacttt
gatgagcccatggaaacggaggaggtggatgtggagcctgtgggtgccaagacctccgac
caagagagggagccagcagaggggacaaaacatgaggcagatcctgggaaagggaccgta
tcttactcagcaagttttctcccagatgtctcttgttgggacattgagcaggaagatgac
agcagtttctcagccctggaagttcaagtggattccagtcacctcccactggtaaaaggg
gcagatgaggaacaagtatttcagttttattggctggatgcttatgaagatccgtacagc
caaccaggtgtggtgtttctatttggcaaagtttggatcgaattcgcccaaacccatgtg
agctgttgtgtcatggtgaaaaacattgagcgaacgctctacttccttccccgtgaaacg
aaaattgatctaaatacagggaaagaaagtggaactccagttacaatgaaggatgtttat
gatgaatttgatgagaaaatagcagcaaaatataagattatgaaattcaagtccaaggca
gtggaaaagaactatgcttttgagatacctgatgttccagagaaatcggagtacttggag
gttagatactcggctgaaatgccacagcttcctcaggatttgaaaggagaaactttttct
catgtatttgggaccaacacatccagcttggaactgttcttgatgaacagaaagatcaaa
ggaccttgttggctcgaagtaaaaaatccacagctcttgaatcagccaatcagttggtgt
aaagttgaggcaatggccttgaaaccggacctggtgaacgtaattaaggatgttggtcct
cctccacttgttgtcatgtctttgagcatgaagacaatgcagaatgcaaagacacatgaa
aacgagattattgctgtggcagcattggtgcatcacagctttgcactagataaagcaccc
ccacggcctccctttcactcacacttctgtgttgtgtctaaaccaaaggattgtattttt
ccatatgattttaaagaaggcattaaggaaaagaatgtgaaggttgaggttgctgcaaca
gaaagaacactgctaggttttttccttgcaaaaattcacaaaattgatcctgatatcatt
gtgggtcataatatttatgggtttgaactggaagtgctacttcagagaattaatgtgtgc
aaagttccttactggtccaagataggtcggctgaagcgatccaacatgccaaagcttggg
ggcaggagtggatttggtgaaagaaatgctacctgtggccgaatgatctgtgatgtggaa
atttcagcaaaggaattgattcgttgtaaaagctaccatttgtctgaacttgttcagcag
attctaaaaactgaaagggttgtaatcccaatggaaaatatacgaaatatgtacagtgac
tcttcttatctgttgtacctgttggaacacacctggaaagatgccaggttcattttgcag
atcatgtgtgagctaaatgttcttccattagcattgcagatcactaacatcgctgggaac
attatgtctaggacgctgatgggtggacgatccgagcgtaacgagttcttgttgcttcat
gcattttatgaaaacaactacattgtgcctgacaagcagcttttcagaaagcctcagcaa
aaaccgggagatgaagatgaagacattgatggagataccaataaatacaaaaaaggacgt
aagaaggcagcttattctggaggcttggtattggacccgaaagttggtttttatgataag
ttcattttgcttctggacttcaacagtttgtatccttccatcattcaggaattcaacatt
tgttttacaacagtgcaaagagttgcttcagaggcacagaaagttacagaggatggagaa
caagaacagatccctgagctgccagatccaagcctggaaatgggcattttgcccagagag
atccggaaactggtagagcggagaagacaagtcaaacaactaatgaaacagcaagattta
aatccagaccttgttcttcagtatgatattcgacagaaggctttgaagctcacggcaaac
agtatgtatggctgcctgggattttcctacagcagattttatgccaaaccactggctgct
ttggtgacatacaaaggaagggagattttgatgcatacgaaagagatggtacagaagatg
aatcttgaagttatttatggagatacagattcaattatgatcaacaccaatagcaccaat
ctggaagaagtgtttaaattgggaaacaaggtgaaaagtgaagtgaataagttgtataaa
ctacttgaaatagacattgatggcattttcaagtccctgctactgctgaagaaaaagaag
tacgctgctctggttgttgagccaacagtggatgggaattacgtcaccaaacaggaggtg
aaaggattagatatagttagaagagattggtgtgatcttgctaaagacactggaaacttt
gtcattggccagatactttcggatcaaagccgggacactatagtggaaaacattcagaag
aggttaatagaaattggagaaaatgtgctaaatggcagtgtcccagtgagccagtttgaa
attaacaaggcgttgacaaaggatccccaggattatcctgataaaaaaagcctacctcat
gtacatgttgccctctggataaattctcaaggaggcagaaaggtgaaagctggagatact
gtgtcgtatgtcatctgtcaggatgggtcaaacctcactgggagtcagagggcctatgca
cccgagcagctgcagaagcaggacaatttaagcattgacacccagtactacctggcccag
cagatccacccagttgtggctcgaatctgtgagccaatagatggaattgatgctgtcctc
attgcaacgtggttaggacttgacgccacccaatttagagttcatcattatcacagagat
gaagagaatgatgctctccttggtggcccagcacagctcacagatgaagagaaatacagg
gactgtgaaaggttcaaatgtccatgccctatatgtggaactgagaatatttatgatagc
gtcttcgatggttcgggaaccgatatggagcccagcttgtatcgttgcagtaacatcgat
tgtaaggcttcgcctctgacctttatggtacagctgagcaacaaattgatcatggacatt
agacgatgcattaaaaaatactacgaaggctggttgatttgtgaggagccaacatgtcga
aatcgaactcggcaccttccccttcagttctcccgaaatggacctctttgccaagtctgc
atgaaagctacacttcgaccagagtattctgataagtccctgtacacccagctgtgcttt
taccggtacatttttgatgcggagtgtgcactggagaaacttactaccgatcatgagaaa
gataagttgaagaagcagttttttactcccaaagttcttcaggactatagaaaactcaag
aacacagcagagcagttcttgtcccaaagtggctactccgaagtgaatctcagcaaactc
tttgccgattgtgctgtgcggtcctga
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