Phocoena phocoena (harbor porpoise): 136142442
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Entry
136142442 CDS
T11058
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04151
PI3K-Akt signaling pathway
pphc04382
Cornified envelope formation
pphc04510
Focal adhesion
pphc04512
ECM-receptor interaction
pphc04820
Cytoskeleton in muscle cells
pphc04926
Relaxin signaling pathway
pphc04933
AGE-RAGE signaling pathway in diabetic complications
pphc04974
Protein digestion and absorption
pphc05146
Amoebiasis
pphc05165
Human papillomavirus infection
pphc05200
Pathways in cancer
pphc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
136142442 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136142442 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
136142442 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
136142442 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
136142442 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
136142442 (COL4A5)
09158 Development and regeneration
04382 Cornified envelope formation
136142442 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
136142442 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
136142442 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
136142442 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
136142442 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
136142442 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pphc04147
]
136142442 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
pphc00536
]
136142442 (COL4A5)
Exosome [BR:
pphc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
136142442 (COL4A5)
Glycosaminoglycan binding proteins [BR:
pphc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136142442 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
136142442
NCBI-ProteinID:
XP_065756657
LinkDB
All DBs
Position
X:91786594..92012759
Genome browser
AA seq
1691 aa
AA seq
DB search
MKLRGVSLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGEGGFPGLEGHPG
LPGFPGPEGPPGPRGQKGSDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGFPGPPG
IQGPAGPTGLPGPIGPLGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDQGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPTGPPGLVIPRPGTGVTVGEKGS
IGLPGLPGEKGERGFPGIQGPPGLPGPPGLAVTGPPGPPGFPGERGQKGDEGPPGISIPG
SPGLDGQPGAPGLPGPPGPPGPHIPPSDEVCEAGPPGPPGSPGDRGLQGEQGVKGDKGDT
CFNCIGTGVSGPPGEPGLPGLPGPPGSLGFPGQKGEKGHAGATGPKGLTGIPGAPGAPGF
PGPKGEPGDILTFPGMKGDKGDLGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGLPGNRGPMGPLGFGPPGPPGEKGIQGVAGNPGQPGIPGPKGDPGQTIT
QPGKPGLPGNPGRDGEVGLPGEPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGTPGRIGLEGPSGPPGFPGLKGEPGFGLPGPPGPPGLPGFKGILGPKGDRGFP
GPQGPPGQAGLDGLPGPKGDIGPNGQPGTMGPPGLPGTGVQGLPGPPGIPGPIGQPGLHG
IPGEKGDPGPPGFDVPGPPGERGSPGIPGAPGPMGPPGSPGLPGKAGASGFPGAKGEMGM
MGPPGPTGPLGIPGRSGVPGLKGDDGLQGQPGLPGPAGEKGSKGEPGLPGLPGPMDPDLL
GSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLT
GPPGLKGNIGDMGFPGPQGAKGSPGPPGVPGQSGSPGLPGQKGDKGDPGISGIGLPGLPG
PKGEPGLPGYPGNPGIKGAMGDTGLPGLPGTPGAKGQPGLPGFPGTPGLPGPKGINGPPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGLQGPPGPPGSPGPALEGPKGNPGPQGPP
GRPGPTGFQGLPGPEGPRGLPGIGGIKGERGNPGQPGQPGLSGLKGDQGPPGLQGNPGRP
GLNGMKGDPGLPGVPGFPGMKGPSGEPGSAGPEGDPGLIGPPGPPGLPGPSGQSIVIKGD
AGPPGVPGQPGLKGLPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGHKGDPGLPGQPGI
RGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTIQVYEGFSLLYVQG
NKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKG
QSIQPFISRCAVCEAPAVVIAVHSQTIQIPRCPQGWDSLWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR
ISRCQVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcagcctggctgccggcttgttcttactggccctgagtctttgg
gggcagcccgcagaggctgcggcttgctatgggtgttctccaggatcaaagtgtgattgt
agtggtataaaaggagaaaagggggagggaggatttccaggtttggaaggccatccaggt
ttgcctggatttccaggtccagaagggccgccagggcctcggggacaaaagggtagtgat
ggaattccagggccaccaggaccaaaagggatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggtttacagggtcctccaggacctcctgggatcccaggtatgaagggagaaccaggtagt
ataattatgtcatcactgccagggccaaagggtaatccaggatttcccggtcctcctgga
atacaaggcccagctggtcccactggtctaccagggccaattggtcccctaggaccacca
ggtttgatgggccctcctggcccaccaggacttccaggaccaaaggggaatatgggctta
aatttccagggacccaagggtgagaagggtgagcaaggtcttcagggcccccctgggcca
cctgggcagatcagtgaacagaaaagaccaattgatgtagagtttcagaagggagatcag
ggacttcctggtgaccaagggcctcctggacctccagggatacgtggtcctccaggtcct
ccaggtggtgtgaaaggtgagaagggtgagcaaggagagcctggcaaaagaggtaaaccg
ggcaaagatggagagaatggccaaccaggaattccaggtttgcctggtgatcctggttac
cctggtgaaccaggaagggatggagaaaagggccaaaaaggtgacattggcccaactggg
cctcctggacttgtgattcctaggcctggaactggtgtaactgtaggagaaaaaggaagc
attgggttacctggcttgcctggagaaaaaggagagcgaggatttcctggaatacagggt
ccacctggccttcctggacctccaggacttgcagttacaggtcctcctgggccccctggc
tttcctggggaaaggggccagaaaggtgatgaaggtccccctggaatttccattcctgga
tctcctggacttgatggacagcctggggctcctggccttccagggcctcctggtcctcct
ggccctcacatccctcctagtgatgaggtatgtgaagcaggccctcctggccctccagga
tctccaggtgatagaggactccaaggagaacaaggagtgaaaggtgacaaaggtgacacg
tgcttcaactgtattggaactggtgtttcagggcctccaggtgaacctggtttgccaggt
cttccaggtcccccaggatctcttggtttccctggacagaagggtgaaaaaggacacgct
ggtgcaaccggtcccaaaggattaacaggcataccaggagctccaggcgctccaggcttt
cccggacctaaaggtgaacctggtgacatcctcacttttccaggaatgaagggtgacaaa
ggagatttgggttctcctggagctccagggcttcctggtttacctggcacccctggacag
gatggattgccagggcttcctggccccaaaggagaacctggtggaattgcttttaagggt
gaaagaggtccccctgggaacccaggtttgccaggtctcccaggaaatagggggcctatg
ggccctcttggttttggccctccaggcccaccaggtgaaaaaggcatacaaggtgtagca
ggaaatccaggccagccaggaataccaggtcctaaaggtgatccaggtcagaccataaca
cagccagggaagcctggcttgcctggtaacccaggcagagatggtgaagtaggtcttcca
ggtgaacctggactcccaggccagccaggcttgccaggtatacctggtagcaaaggagaa
ccaggtatccctggaattgggcttcctggaccacctggtcccaaaggtttccctggaatt
ccaggacctccaggagcacctgggacacctggaagaattggtctagaaggtccttctggg
ccaccaggctttccaggactaaagggagaaccaggatttgggctacctgggccacctggg
cctccaggactcccaggtttcaaaggaatacttggtccaaaaggggatcgtggtttccca
ggacctcaaggtcctccaggacaagctggcttggatgggctacctggaccaaaaggtgac
attggaccaaatggacaacctgggacaatgggacctcctgggctgccaggaacaggtgtt
cagggactaccagggccaccaggaattcctggaccaataggtcaacctggcttgcatgga
ataccaggagagaagggggatccagggcctcctggatttgatgttccaggaccccctggt
gagagaggcagtccagggatccctggagcaccaggtcctatgggacccccaggatcacca
gggctcccaggaaaagcaggtgcctctggctttccaggtgccaaaggtgaaatgggtatg
atgggacctccaggcccaacaggacctttgggaattcctggcaggagtggtgttcctggt
ctcaaaggtgatgatggtttgcagggtcagccaggacttcctggccctgcaggagagaaa
ggtagtaaaggagagcctggccttccaggccttcctggaccaatggatccagatctgctg
ggctcaaaaggagagaaaggggaccctggcctaccaggtattcctggagttgcagggcca
aaaggttatcagggtttgcctggagacccagggcaacctggactgagtggacagcctgga
ttaccaggaccatcgggtcccaagggtaaccctggtctccctgggaagccaggacttaca
ggacctcctggacttaaaggaaacataggcgatatgggttttccaggcccccagggtgca
aaagggtctcctggacctcctggagttcctggacaatctggatccccgggattacctgga
cagaaaggagataaaggtgatcctggtatttcaggcattggtcttccaggtcttcctggc
ccaaagggtgaacctggtctgccgggatacccagggaaccctggtatcaaaggtgctatg
ggagatactggtttgcctggattaccggggacccctggagcaaaaggacaaccaggcctt
cctggattccctggaaccccaggccttcctggaccaaaaggtattaatggtcctcctggg
aaccctggccttccaggagaacctggtcctgtaggtggtggaggtcgtcctgggccacca
gggcctccaggtgaaaaaggcaaaccaggtcaagatggtattcctggaccagctggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcaaaagggtgatggaggattacctggcattccaggaaaccctggccttccaggt
ccaaagggtgaaccaggctttcatggtttccctggtctgcagggtcccccaggccctcct
ggttctccaggtccagctctggaaggccctaaaggcaaccctgggccccaaggtcctcca
gggagaccaggtcctacaggttttcaaggtctaccaggtccagaaggtccccggggtctc
cctggaattgggggcattaaaggagagagaggaaacccgggccaacctgggcaacctggt
ttgtctggtttgaaaggagatcaaggaccaccaggactccagggtaatcctggccggcca
ggtctcaatggaatgaaaggagatcctggtctccctggtgttccaggatttccaggcatg
aaaggacccagtggagaacctggttcagctggccctgagggggatccaggacttattggc
cccccaggcccccctggattacctggtccttcaggacagagtattgtaatcaaaggagat
gctggtccgccaggggttccaggccagcctggattaaaaggtctaccaggactaccagga
cctcaaggtttaccaggtccaattggccctccaggagatcctggacgcaatggactccct
ggctttgatggtgcaggagggcacaaaggagacccaggtttaccaggccagccaggtatc
cgtggtttggatggtccccccgggccagatggattgcaaggtcccccaggtccccctgga
acctcctctgttgcccatggatttctcatcacacgtcacagccagacaacagatgcacca
caatgcccacagggaactatccaggtttatgaaggcttttcactcctgtatgtacaagga
aataaaagagctcacggtcaagacttgggaacggctggcagctgccttcgtcgcttcagt
accatgcctttcatgttctgcaacatcaataatgtttgcaactttgcttcaagaaatgac
tattcttactggctctccaccccagagcccatgccaatgagcatggagcccctgaagggc
cagagcatccagccattcattagtcgatgcgcagtatgtgaagctccggccgtggtgatt
gcagttcacagtcagaccatccagattccccgttgtcctcagggatgggattctctctgg
attggttattccttcatgatgcacacaagtgcaggggcagagggctcaggtcaagccctg
gcctcccctggttcctgcttggaagagtttcgttcagctcccttcattgagtgtcatggg
cgggggacctgcaactattatgccaactcctacagcttttggctggcaactgtagatgtg
tcagacatgttcagcaaacctcagtcagaaacgctgaaagcaggagacttgaggacacgt
attagtcgatgtcaagtgtgcatgaagaggacataa
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