Phocoena phocoena (harbor porpoise): 136142481
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Entry
136142481 CDS
T11058
Symbol
SOX3
Name
(RefSeq) transcription factor SOX-3 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136142481 (SOX3)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
136142481 (SOX3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
136142481
NCBI-ProteinID:
XP_065756737
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All DBs
Position
X:complement(118159683..118161026)
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AA seq
447 aa
AA seq
DB search
MRPARDNASGASSLQVPADLALSTSARLPDPLAHRPPSAPPTESPGLFTVAAPAPGAPSP
PATLAHLLPAQAMYSLLETELKNSAGPPTPAAGAGGPAAPGGAGKSTANAGGGANAGGGS
GGGASGGGGGGGGGGGGSDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGAD
WKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAA
AAAAAAAAAAASSPVGVGQRLDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALP
QMHRYDMAGLQYSPMMPPGAQSYMNAAAAAAAASGYGGMAPSAAAAAAAYGQQPATAAAA
AAAAAMSLGPMGTVVKTEPSSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAASPLP
GGRLHSVHQHYQGAGTAVNGTVPLTHI
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccagctcgagacaacgcatcaggtgcgagtagcctgcaggttcccgctgatttg
gcgctgagcacttcggcaagactgcccgacccactggcccaccggcccccaagcgcccct
ccgacggagtccccaggccttttcaccgtggccgctccagccccgggagcgccttctcct
cccgccaccctggcgcaccttcttcccgcccaggccatgtacagcctgctggagactgaa
ctcaagaactccgcggggccacccaccccagctgcaggcgcgggcggccccgcagccccg
ggcggtgcaggcaagagtaccgcgaacgcaggcggcggcgcgaacgcaggcggcggcagc
ggcggtggcgcgagcggcggcggcggcggcggcggcggcggcggcgggggcagtgaccag
gaccgggtgaagcggcccatgaacgccttcatggtgtggtcccgcgggcagcggcgcaag
atggctctggagaaccccaagatgcacaactctgagatcagcaagcgcttgggcgccgac
tggaaactgctgaccgatgccgagaagcggccgttcatcgacgaggccaagcggctgcgc
gccgtgcacatgaaagaatacccggactacaagtaccggccgcgccgcaagaccaagacg
ctgctcaagaaggacaagtactccctgcccggcggcctgctgccccccggagccgcggcc
gccgccgccgccgctgccgccgccgccgccgctagcagcccggtgggcgtgggccagcgc
ctggacacgtacacacacgtgaacggctgggccaacggcgcgtactcgctggtgcaggag
cagctgggctacgcgcagcccgcaaccatgagcagcccgccgccgccgcccgcgctgccg
cagatgcaccgctacgacatggccggcctgcagtacagccccatgatgccgcccggcgcc
cagagctacatgaacgccgccgccgccgcggctgccgcctcgggctacgggggcatggcg
ccctccgccgccgccgccgccgccgcctacgggcagcagccagccaccgccgccgccgcc
gcggccgccgccgccatgagcctgggccccatgggcacggtggtgaagaccgagcccagc
tcgccgccgcccgccatcgcgtcgcactcgcagcgcgcgtgcctcggcgacctgcgcgac
atgatcagcatgtacctgccgcccggcggggacgcggctgacgccgcctcgccgctgccg
ggcggccgcctgcacagcgtgcaccagcactaccagggcgccgggactgccgtcaacgga
acggtgccgctgacccacatctga
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