Phocoena phocoena (harbor porpoise): 136142641
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Entry
136142641 CDS
T11058
Symbol
APEX2
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease 2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136142641 (APEX2)
Enzymes [BR:
pphc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
136142641 (APEX2)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
136142641 (APEX2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
136142641
NCBI-ProteinID:
XP_065756998
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Position
X:complement(47441397..47448793)
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AA seq
515 aa
AA seq
DB search
MLRVVSWNINGIRSPVQGVGYEEPSNCTAMTMGRILDKLDADIVCLQETKVTRDVLTEPL
AIIEGCNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLATQNGDVGCYGNMDDFT
QEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLAFKMRFYRLLQI
RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDHLLSNLGCQAGSHT
GPFIDSYRCFHPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVMDTFQASFLLPEVM
GSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVRLEQDPVFRQSALQLS
NQTPVQMRQNKARVRSTRSRPSQPGSSRGQKNLMSYFQPSSSRPQASPNLGLPSLGNLMT
PKTSEEDVMANVVEGRAKASEAKDEKEVRTSFWKSLLGGPLPMPLCGGHREPCVMRTVKK
PGPNLGRHFYMCARPQGPPTDPSSRCSFFLWSRPS
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgcgtggtgagctggaacatcaatgggattcgcagccccgtgcaaggggtggga
tacgaggagcccagcaattgtaccgccatgaccatggggcgcattttggacaagctggat
gctgacatcgtctgtcttcaggagaccaaagtaaccagggatgtgctgacagagcccctg
gctatcattgagggctgtaactcctatttcagcttcagccgcaaccgtagtggctattct
ggtgtagccaccttctgtaaggacagtgctaccccagtggctgctgaagaaggcctgagt
ggcctacttgccactcagaatggggacgtgggttgctacggaaacatggatgacttcact
caagaggagcttcgagctctggatagtgagggccgggccctcctcacacaacacaagatc
tgcacatgggaagggaaggagaagaccttgaccctaatcaacgtgtactgcccccatgcg
gaccctgggaagcctgagcggctcgcctttaagatgcgcttctatcgcttgctgcagatc
cgagcagaagccctcctggcagctggcagccatgttatcattctgggggacctgaataca
gctcaccgccccattgaccactgggatgcagtcaacctggaatgctttgaagaggaccca
ggtcgcaagtggatggaccacttgctcagtaacctggggtgccaggctggttcccatacg
ggacccttcattgatagctaccgatgcttccatccaaagcagaagggggccttcacctgc
tggtccacagtcagtggcgcccgccatctgaactatggctctcggcttgactatgtgctg
ggagacaggaccctggtcatggacacctttcaggcctccttcttgctgcctgaggtgatg
ggctctgaccactgccctgtgggtgcagtcttaagcgtgtcttctgttccggcaaaacag
tgccctcctctgtgcacccgcttcctccctgagtttgcaggcacccagctcaagatcctt
agattcctagttcgtctcgaacaagatcctgtgttcaggcagtcagcgctacagctcagc
aatcaaacaccggtacagatgcgccaaaacaaagctcgtgtgcgctcgaccaggtctcgg
ccaagtcaacctggttccagtagaggccaaaaaaacctgatgagctacttccagccatcc
tccagtcgtccccaagcttctcctaacttggggcttcctagcctgggcaacctcatgacc
ccaaagacctcagaagaggacgtgatggccaatgtggtggaggggcgggccaaggcttca
gaggccaaggatgaaaaggaggtacggacctcattctggaagtctctgctgggggggccc
ttgcccatgcccctgtgtgggggccacagggagccgtgtgtaatgcgaactgtgaagaag
ccaggacccaacctgggccgccacttctacatgtgtgccaggccccagggtcctcccact
gacccctcctcccgctgcagcttcttcctctggagcaggcccagctga
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