Pseudoalteromonas phenolica: PP2015_1315
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Entry
PP2015_1315 CDS
T04165
Name
(GenBank) Helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pphe
Pseudoalteromonas phenolica
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphe03019
]
PP2015_1315
Enzymes [BR:
pphe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PP2015_1315
Messenger RNA biogenesis [BR:
pphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PP2015_1315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
AAA_25
PhoH
RsgA_GTPase
MetJ
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ALO41827
UniProt:
A0A0S2K1A9
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All DBs
Position
I:1513314..1517198
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AA seq
1294 aa
AA seq
DB search
MSVGPLFTELKTCLKKDQFIFKKRLHGVKKINDENKQTKVIASIKKDIEASQSLRATRLE
NLPKVDYPEQLPVSQKKDEIKKAIAENQVVIVAGETGSGKTTQLPKICLELGRGVDGYIG
HTQPRRLAARSVANRIAEELNCDLGEEVGFKIRFSDQVGDKSYVKLMTDGILLAEIQNDR
FLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKIIITSATIDPERFSKHFNNAPI
IEVSGRTYPVEVRYRPTLDLAGNESEAENDQLQGIFDAVDELCSEGPGDILIFMNGEREI
RDTADALGKRNLKGVEVLPLYARLSNAEQNRIFAPHSHRRIVLSTNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVASGICIRLYSEEDFLGRPEF
TDPEILRTNLASVILQMLGLGLGDISEFPFVQAPDSRNINDGIALLEELEAVHPSKRRQQ
TKLTQSGRALSRLPIDPRLAKMVLSAEKLGALREVIVIVAALSIQDPRERPQDKKGASDE
KHERFAHPDSDFLAFLNLWYYLEQQQEELSRSQFRKLCQKEFLAYMRIREWQDIVYQLTT
VCQEMGMKLTDNQAEVDNIHQALLSGMLSHIGFKDEKQVYKGARNSQFHIFPGSSLFKKS
PKWLMSAELVETSKLYARMNAKIDVAWVPLIAQHLVKRSFSEPHWEKKPGCVIAYEQQSL
YGMIIVSKKRTVYSQIDPVVSRELFIKEALIADQLGQQEGFLKYNQDLIDEIHTLEKKAR
RRDILVDEITLFEFYDEKIPQDVNNRAAFNHWWKKQKQKDKRYLHMSRDYLMQHGAEQIT
EFDYPDTWQQGNLILPLSYHFEPGQPVDGVTVNIPLALLNQVQDEGFDWHIPALRHELIC
GLIKSLPKTLRRNFVPAPNYADAVLASVEPMQGRLIDALSNRLLKMTGVRVAEEQWDTSM
LDTHLVMQFEVVDEKNKVLAHGKDLLKLKAQLQGQVTSTLSKVAEQGIEQSDLTQWEFGE
LPKEYTKKQGNYEIKAFPALVDKKSSAAIELFDNELKAQAAHQQGLRRLVLLNVPSPIKY
LQQHLPNKAKLGLYFNPFGKIQDLIDDCIASGVDALLQKQGDIRDEQAFEQVKEFIRGEL
GDAVVEIATQVEQVLSVAHAINKRMKGKVDLTMITAHGDIKSQLESLIFRGFVSKHGAEK
LNDLLRYMKAIERRLEKLPVDPNRDRLCTLELDKVAQEYQKKLAKIPKGLPVPKELENIF
WMQQELRVSLFAQTLGTPYAISAKRVLNALKECD
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtaggaccgctatttactgagctaaaaacttgccttaagaaagatcagtttatt
tttaaaaaacgcctgcatggtgttaaaaaaataaatgacgagaataaacaaaccaaagtt
attgcttcaattaagaaagatattgaggccagtcagtcgttgcgtgctactcgcttagaa
aacctaccaaaagtagattatcccgagcaacttcctgttagccagaaaaaagacgaaata
aaaaaagccatcgctgaaaatcaagttgtgattgtggccggtgaaactggctcgggtaaa
accacacaattacctaaaatttgtttagagttaggtcgtggtgttgacggctatattggt
catactcagcctcgtcgattagcagcaagaagcgtagcgaatcgtattgccgaagaactg
aattgtgatttaggtgaagaggttggttttaaaattcgatttagcgatcaggttggtgac
aaatcgtacgttaaacttatgaccgatggtattttgttggcggaaattcaaaacgatcgt
tttttgaatcagtatgatacgattattatcgatgaagcccacgaaagaagccttaacatt
gatttcattttaggttatttaaaaaaccttttacctaagcgtcctgatctaaaaatcatc
atcacatctgcaaccattgatcctgaacgtttctctaagcacttcaataacgcgcctatt
attgaagtatcaggaagaacctacccagttgaagtcagatatagacccacacttgattta
gcaggcaatgaaagcgaagcagaaaacgaccaattgcaaggtatttttgatgcggttgat
gagttatgttctgaaggtccgggtgacattcttattttcatgaatggtgaaagagagata
agagataccgctgatgcgctaggtaagcgaaatttaaagggcgtagaagtcttaccgtta
tatgccagactctcaaatgcggagcaaaatcgtatttttgcccctcacagccatcgacgc
attgtcttatctaccaacgtagctgaaacatcactgactgtacccggtattcgttatgtg
attgatccaggtactgcgcgtattagtcgttacagctatcgaacaaaagtgcagcgttta
cccatagaggccatctctcaagccagtgctaaccagcgtaaaggtcgctgtggtcgtgtg
gcttcaggtatttgtattcgtctgtattcagaagaagactttttaggtcgccctgagttt
acagatcctgagatccttcgtacaaacttagcatcggttatcttgcaaatgcttggctta
gggcttggcgatatcagtgagtttccgtttgtacaggcacctgatagccgaaatatcaat
gacggtattgccctacttgaagagctcgaagcggttcatccttctaaaagaagacagcaa
accaagcttactcaatctggtcgtgctttaagtcgcttaccgatagatcctcgcttggcg
aaaatggtgttgtctgctgaaaagctgggcgcattgcgtgaagtcatcgttatagttgct
gccttatccattcaagatccaagagagcgcccgcaagataaaaaaggcgcgtcagatgaa
aagcatgagcgctttgcgcatcctgattctgatttcttagcattcttgaatttatggtat
tacttagaacaacaacaagaagagttaagccgtagccaatttagaaagctctgtcagaaa
gagttcttagcctatatgcgtattcgtgaatggcaagatattgtttatcagttgaccaca
gtctgccaagaaatgggtatgaagcttactgataatcaagccgaagtagataatattcat
caagccttgctcagcggtatgttgagtcatattggttttaaagatgaaaagcaggtctat
aaaggggcgcgtaatagccaatttcatattttcccaggttctagccttttcaaaaagtcg
ccaaagtggttgatgtcagcagagttagttgaaaccagcaagctatatgcccgcatgaac
gcgaaaattgatgtggcttgggtgccattgattgcacagcatttagtgaagcgtagtttc
agtgaacctcactgggagaaaaaaccaggttgtgtgattgcttacgagcagcaaagtcta
tatggcatgattatcgtctccaagaagcgtactgtatatagtcaaattgacccggtggtc
agtcgcgagttattcattaaagaagcgctgattgcagatcaacttggtcaacaagaaggc
ttcttgaaatataaccaagatttaattgatgaaatccacacgcttgagaaaaaagcccgt
cgtagagatatcttagtagacgaaattactttgtttgaattctacgatgaaaaaattcca
caagatgtgaataaccgggctgcgtttaaccattggtggaaaaagcaaaagcaaaaagat
aagcgttaccttcatatgtctcgtgactatttgatgcagcatggggcggagcagatcact
gagtttgattatcctgatacgtggcaacaaggtaatttaattctacctttgagctatcat
tttgaaccgggacaacctgttgacggtgttacggttaatattcctttggcactgcttaac
caagttcaagatgaagggttcgactggcatattccagctctgagacacgaactcatatgt
ggtctcattaaaagcttgccgaaaaccttaagaagaaattttgttcctgcaccaaattat
gcagatgcagttttagcgagtgttgagccgatgcaagggcgtttaattgatgcacttagc
aatcgtctactgaaaatgacgggagtccgtgttgccgaagagcaatgggacaccagcatg
ttagatacgcatttagtgatgcaatttgaagtcgttgatgagaaaaataaggtcttagct
cacggcaaagatttgctgaaattaaaagcacaattacaaggtcaagtaacaagtacattg
tctaaagtggcagagcagggcattgagcaaagcgatcttacacaatgggagtttggcgag
ttaccaaaagagtacactaagaaacagggtaactatgaaatcaaagcattccctgcacta
gtggacaaaaagtctagtgctgcgattgaattattcgataatgaattaaaagcacaagca
gcgcatcagcaagggttaagaaggttggtgctattaaatgtaccgtcaccaattaaatac
ttgcagcagcatttaccaaataaggccaagcttggcttgtactttaacccatttggtaaa
atacaagatttgattgatgactgtattgcttctggtgtagatgccttgttacaaaaacag
ggtgatatacgagacgagcaagcgtttgagcaggttaaagaatttattcgtggtgagtta
ggtgacgcggttgttgaaattgccactcaggtagaacaagtgttaagtgttgcgcatgct
ataaataagcgtatgaaaggcaaagttgacttaaccatgatcaccgctcatggtgacatc
aagtcacagttagagtctttgatattcagagggtttgtgagcaaacacggggctgagaaa
ctcaatgatttactgcgttatatgaaagccattgaacgtcgtttagaaaagctacctgtt
gatcctaatcgggacaggttgtgtacattagagttagataaagttgctcaagaataccag
aaaaaattggctaaaattccaaaaggattaccagtaccaaaggaacttgaaaatattttt
tggatgcaacaggaactaagagtgtctttgtttgctcaaacattaggaacaccttacgca
atttcagctaagcgtgttcttaatgcacttaaagagtgcgattaa
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