Pseudoalteromonas phenolica: PP2015_2889
Help
Entry
PP2015_2889 CDS
T04165
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP2015_2889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphe03019
]
PP2015_2889
03400 DNA repair and recombination proteins [BR:
pphe03400
]
PP2015_2889
Enzymes [BR:
pphe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PP2015_2889
Messenger RNA biogenesis [BR:
pphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP2015_2889
DNA repair and recombination proteins [BR:
pphe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PP2015_2889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HEM4
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ALO43373
UniProt:
A0A0S2K550
LinkDB
All DBs
Position
I:3299557..3301500
Genome browser
AA seq
647 aa
AA seq
DB search
MPANRQKIGTNRHNFAEGCKPSNTSAQINLQTSKAKATKMPAMKSDPICEHSTLAKQALK
ETFGYAEFRAGQEAVINAALSGQDTLVLLPTGGGKSLCYQIPALLFNGATVVISPLISLM
EDQVSQLQAIGVSAAYINNTVDFARQNAIFNQLADGQLKLLYVAPEKALQFDFIQRLKSL
NVCFFAIDEAHCVSHWGHDFRPHYRRLSELKQHFPHCPMMALTATADIATRHDIAHQLGL
NAPYIHTGSFDRPNIRYTIEEKFKPLSQLMRYLREQKGQSGIIYCTSRKRVDDISEKLAE
AGFNVAAYHAGMSNEQRQFVQKAFARDDINIVVATVAFGMGINKLNVRFVLHYDIPKSIE
AYYQETGRAGRDGLAAEAIMYFDPADIGRVKRFFEDIPDEARRKVEEQRFQAMANFAEAQ
TCRRQILLNYFSEYQREPCGNCDICLNPPKRFDGTLVAQQALSCVYRAQQRFGLGYIVDL
LRGANTSRIRDNGHHELSTYGIGKSHSVEYWLSILRQLVHHGLLAQDITQGASLKLTEAA
RAVLRGEYVLQLAEPRLQAKHVYQDKLAQFNYDKKLFAKLRSLRKELADADDVPPYVVFN
DKTLAEMAQKMPTDDAEFLNVSGVGFSKLSKYGAPFMQLIRNYLAAS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcaaatagacagaaaataggaactaaccgacataactttgccgaaggctgtaaa
ccgtcaaacacatcagcgcaaataaatttacagacaagtaaagcaaaagccactaaaatg
cccgccatgaaatcagacccaatctgcgaacattcaacccttgctaagcaagcattaaaa
gagacttttggctacgctgaatttagagctggccaagaggcagttattaatgcggcatta
agtggacaagatactttagtattactgcctactggtggtggtaaatcattgtgttaccag
atcccagcacttttattcaatggagctaccgttgttatttcacctttgatctcgttgatg
gaagatcaagtctctcagcttcaagccattggagtaagcgctgcatatatcaataacacg
gtagattttgctcgacaaaatgcaatttttaatcaattagcagatggtcaattgaaattg
ctgtatgttgcgccagaaaaggcgctgcaatttgattttattcaaagattaaaaagctta
aacgtttgtttttttgctattgatgaagctcactgcgtgtctcactggggacatgatttc
agaccccattatcgtaggttaagtgagcttaaacagcactttcctcattgtcctatgatg
gctttaacggcaactgcagatattgctacacgtcatgatattgcgcaccaactgggatta
aatgccccttatattcataccggtagctttgacagaccaaatattcgctacaccattgaa
gaaaaattcaagcctctttctcagcttatgcgctatttgcgagagcaaaagggccaaagc
ggcattatttattgcaccagtcgtaagcgtgtagacgatatatctgaaaagcttgccgaa
gcaggctttaatgtcgccgcttaccatgctggtatgagtaatgagcaacgccaattcgtg
caaaaagcttttgccagagacgatattaatattgtcgttgctacggttgcattcggcatg
ggtattaataaattaaacgtacgatttgtgcttcactacgatatacctaaaagtatcgaa
gcttactatcaagaaactggccgtgcaggtcgtgatggacttgcagcagaagccatcatg
tattttgaccccgctgacataggtcgcgtcaaacgttttttcgaagatattcccgatgaa
gcaagacgtaaagtagaagaacaacgctttcaagctatggcaaactttgcggaagcacaa
acttgccgtcgacaaattttattaaactattttagcgaatatcaaagagaaccttgtggc
aactgcgatatttgcttaaaccctccaaaacgtttcgatggtactttagtggctcaacag
gctctctcttgtgtttatcgtgcacaacaacgatttggcttagggtatatagttgattta
ctgagaggtgcgaatactagtcgaattcgcgataacggtcaccatgaattgagtacctat
ggtataggcaaaagtcatagtgtcgagtactggctgagcatattgcgacaacttgtccac
catgggttacttgcacaagatattactcaaggcgcaagcctcaagcttactgaagctgct
agagctgtattacgtggtgaatatgtattgcaattggctgaaccacgcttgcaggctaaa
cacgtttatcaagacaaactggcacaatttaattacgataaaaagcttttcgccaaatta
cgtagtttgcgaaaagagctcgcagatgcggacgatgtaccaccttacgtggtctttaac
gataaaacgttggctgaaatggcgcaaaagatgccaaccgatgacgctgaatttttaaat
gtttctggcgtcggttttagcaagcttagtaaatatggtgcgccgtttatgcaattgatc
cgaaattatttagccgcgagttag
DBGET
integrated database retrieval system
