Pseudoalteromonas phenolica: PP2015_3427
Help
Entry
PP2015_3427 CDS
T04165
Name
(GenBank) Exonuclease SbcD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pphe
Pseudoalteromonas phenolica
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphe03400
]
PP2015_3427
DNA repair and recombination proteins [BR:
pphe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PP2015_3427
Archaeal homologous recombinant proteins
PP2015_3427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
SMC_N
AAA_21
MMR_HSR1
AAA_22
cobW
Motif
Other DBs
NCBI-ProteinID:
ALO43902
UniProt:
A0A0S2K736
LinkDB
All DBs
Position
II:49127..52783
Genome browser
AA seq
1218 aa
AA seq
DB search
MKLLKIAITNLASITRADIDFEKAPLEQAGLFAITGDTGAGKSTLLDAICLALYAKTARL
KNDLKNTVSFNGDDIKLNDPRNLLRRGCAEGSAEVTFLGQDGERYLAKWSVARARKKVSG
KLKTHEHEIIRLSDETLLAHKSAAVKAVEQLIGLSFEQFTRTVLLAQHEFAAFLKASSDE
RAQLLECLTATDKFSRIGQLIFEKHKEKKAELERLKDSLSAYVLLTDEQLEQLTLDANTH
KQQLDELRAQQAQYKSSLQWLTESAQLRTQLVQTEQAIQETEAKLTEKGHAYNEAEQAQA
AFEIADNRQQWAVTKNNLSTLELKQSELKTKDFTAQIQQAEDISNKASDALQQTEVYVTE
QQKVLIEVRQFDTKIANADSVLQQVLKQQSELEQQQTKLSVEQQNTNTNLQQVQQQSNKL
ESLLTTNSSLQSTVENWSHLKGLLDEIIDKQLQSHSVNVVLQNAQKQHHENIQQAEPLKS
GLLQLQSQLELGQSSIDVLQKQIEQLNIDDLQSTTQRLQHVIGLMQNISDISAEQLQHQS
AMASNFQKKQAIEVQMADTERQKELSKQRVNVTRDSLTQVQLRASESISALRAELKPGHE
CMVCGSKEHPYAVDHIDSHWTNLLNDFAMQNQQAEQAYEQAMQRSRTHLAEFEKVNARYQ
ESKLQNQRLVSKISELQGQLEQFIEYQGWSLQQCLDHQQILVQQQQHYSAIQSQLQKAWQ
LQQEKQKLFEQQQTQLNAITQQETELSHQIEQQQNTLTQLSQGLSRAEQQARGYYADETW
WEQFEKAPKDALFSLTKTVDDFKNNREKLAQLQKSQQTLTLQLNHLQESAINVSQQLKEV
SNTVEKARSEKLSFEQARFERLPQEISADEWQEKCQTQLKARQHDLNTCSEQLKHILQAE
KDKQKDLISLNKQIEILLTQKAALESRFEQWLNEKSQIFADLNEERVTYLLRLSKADIQQ
TLSEFKQLSHGKVELSGKLSHLKESLHTHLAKALTELTEHQINEQLVILESQFQQTQQSW
LGVNTQLEQHHNNVEKLATEQQKLNSFQAKYEHWHLLDKLLGDATGKKLRNIAQTQTLKI
LLQYANQHLASLSKRYRLAVIGHSLNIAIIDKDMADEQRSVNTLSGGESFLVSLALALGL
ASLSSNKVNIGSLFIDEGFGTLDPETLSVALDALDALQAQGRKVGVISHVSEMSERVATQ
VQVKKQPGGYSNVLIKGT
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattacttaaaatagcaatcacaaatttagcttctattacccgggcagatattgat
tttgaaaaggcgcctttagagcaagctggattatttgcaattactggtgacacaggtgca
ggtaaaagtactttattagatgccatttgtttagcgctttatgcaaaaacagctcgtcta
aaaaatgatttaaagaatactgtgtcgttcaatggtgacgacattaagttaaacgaccca
agaaacttactccgtagaggctgtgctgaaggctctgctgaggtgacttttttaggccaa
gatggtgagcgttatttagcaaaatggtcagttgcaagagcgcgtaaaaaagtctcaggt
aaactaaagacacatgagcacgagattattcgcctcagtgacgaaaccttgttggcccat
aaaagcgcggcggttaaagcggtcgagcaattaatcggtcttagctttgagcaatttacg
cgtacagtattactcgctcagcatgagtttgccgcattcttaaaagccagtagcgatgaa
cgcgcacaacttttagagtgtttaactgcgaccgataaatttagtcgtattggtcagctg
atttttgaaaaacataaagaaaaaaaagcagaactcgagcgattaaaagatagcttaagt
gcctatgtgttattaactgatgagcaacttgagcaattaacccttgatgcaaacacgcac
aagcagcagttagatgaattaagagcacaacaagctcagtacaagtcatcattgcaatgg
cttacagagtcagcccaattgcgaactcaattagtgcaaacagagcaggctattcaagaa
acagaagctaaactgacagaaaaaggacacgcctataatgaagcagagcaagcacaagcg
gcttttgagattgccgataatcgccagcaatgggcggtgacaaaaaataatttaagtaca
ctagaattaaaacaaagcgagctcaaaacaaaagactttaccgcgcaaatacagcaagca
gaagatatttcgaataaagcgtctgatgcgctacaacaaactgaagtctatgtgacagag
caacaaaaagttctgattgaggtcaggcaatttgatacgaaaatcgcgaatgctgattca
gtattacagcaagtcttaaagcaacaaagtgagcttgagcaacagcaaactaagctttca
gtagaacagcaaaataccaatacgaatttacagcaagtacagcaacaaagtaacaaatta
gagtcgctattaactaccaatagcagcttacaaagtacagtggaaaactggtcacatctc
aaaggtttgctagacgagattatagataagcaacttcaatctcacagtgtgaacgttgta
ttacaaaatgcacaaaagcaacatcatgaaaatattcaacaagctgagccacttaagtct
gggttattgcaattacaatcacagttggaattgggacaatcgtcaattgatgtactccaa
aaacaaattgaacagttaaacatcgatgatttgcaatcaacgactcagcggctgcaacat
gttattggtttgatgcaaaatatttcagatatcagtgcggagcagttgcaacatcaatca
gccatggcaagcaactttcaaaagaagcaagccattgaagtgcaaatggcagataccgag
cggcaaaaagagttgagcaagcagcgagtaaatgtcacgcgagacagcttaacgcaagtg
caacttcgtgccagcgaaagtattagtgcattacgtgctgaactaaagcctggtcatgaa
tgtatggtgtgtggttcaaaagagcatccctatgctgttgatcatattgatagccattgg
acgaatttactcaatgactttgcaatgcagaaccaacaggcagagcaagcttatgagcaa
gctatgcaaagaagtcgtactcatctcgcagagtttgaaaaagtgaacgcaagatatcaa
gaaagcaaactgcaaaaccagcgtttagttagcaagatatcagagctacaaggacagctt
gaacaatttatagagtaccaagggtggtcgttgcaacagtgtttagatcaccaacaaata
cttgttcagcaacaacaacactattcagctattcagtcgcaattacaaaaagcttggcaa
ttacaacaagaaaaacaaaagttgttcgagcaacaacaaacgcaactaaatgccataacg
cagcaagaaactgagctttctcatcagattgaacaacagcaaaataccctcactcaactt
tcacaaggactgagccgagcagagcaacaggcaagaggttattatgctgatgaaacatgg
tgggaacagtttgaaaaagcgccaaaagatgcattgttttctttaacaaaaacggttgat
gattttaaaaataatagagaaaaacttgctcagcttcagaagtcacaacaaacattaacc
ttgcagttaaatcatttgcaagaatcagcaataaatgtttctcagcagttgaaggaggtt
agtaatacagttgagaaagcgcgctcagagaagttgagctttgagcaagcaaggtttgag
cgtttaccacaagagatcagcgctgatgaatggcaagaaaagtgtcaaacacaattaaaa
gcaaggcaacatgatttaaatacttgttctgaacaattgaagcacattttgcaggctgaa
aaagataaacaaaaagatctgatttctctaaataaacagatcgagattttactaactcaa
aaagccgctctagagtcgcggtttgaacaatggctcaatgaaaagtcgcaaatttttgct
gacttgaatgaagaaagagtcacttacttactcaggctttcaaaagcagatattcagcaa
accttgtctgagtttaagcagttatcacacggcaaagtagagttatcaggcaagttaagt
catttgaaagagagcttgcatacgcatttagcgaaagcgctgacagagctaacagagcat
caaattaatgagcagttagtaattttagaatctcagtttcaacaaacgcaacaatcctgg
ctgggggtgaatacgcaacttgaacaacatcacaataatgttgaaaaacttgcaactgag
cagcaaaagctcaattcatttcaagctaagtatgaacattggcacttgctcgataaatta
cttggcgatgccacgggaaaaaagctgcgcaatatagcacaaacacagaccttaaaaatc
ttacttcaatatgcaaaccagcatttagcgagtctgtcaaagcgatatcgcctggctgtg
attggccactctttgaatattgccattattgataaagacatggccgatgagcaacgctca
gtaaatacgctttccggtggagagtctttcttagtttccttggctttggctttagggttg
gcttcactgtcttcaaacaaagtaaatataggttcgctattcattgatgaaggttttggc
acgttagaccccgaaactttaagtgtggcgctagatgctttagatgccctacaagcacag
ggtcgaaaagtgggtgtcatctcacacgtaagtgaaatgtcagaacgcgttgccacacaa
gtccaagtaaaaaagcagcctggtggctattcgaacgtattaataaaaggtacttaa
DBGET
integrated database retrieval system
