Pseudoalteromonas phenolica: PP2015_586
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Entry
PP2015_586 CDS
T04165
Name
(GenBank) Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe03410
Base excision repair
pphe03430
Mismatch repair
pphe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PP2015_586
03430 Mismatch repair
PP2015_586
03440 Homologous recombination
PP2015_586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphe03400
]
PP2015_586
DNA repair and recombination proteins [BR:
pphe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PP2015_586
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PP2015_586
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PP2015_586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
DMA
Motif
Other DBs
NCBI-ProteinID:
ALO41106
UniProt:
A0A0S2JZ71
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All DBs
Position
I:672275..674005
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AA seq
576 aa
AA seq
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MQTVIATRERVDDSHLPAHLHPVIKQIYAARGVSDPVELDNRASTLLNFNLFKDMDKACA
LLVEALQQQSKVLIVGDFDADGATSTSVLMEGLALFGFQHVDYLVPDRFSLGYGLSPALA
EQIVTIAPDLVITVDNGISCISGVEIVKNAGIKVLITDHHLQGEQLPNADAIVNPNQHSC
NFPSKSIAGVGVAFYLLVALRHSLRELQYFATQQQPEPNLAELLDIVALGTVADVVALDA
NNRTLVYQGLARIRSGKTRPGITALIEVAKRNAARLSASDFGFALAPRLNAAGRLDDMSL
GIACLLSKDINQARRIAGELDALNHERREIEAGMQQEAQAVLERLVSTQQSVPDVVCLYQ
DDWHQGVIGILAGRLKERYHRPAIIFAQGDEGEIKGSCRSIEGLHMRDLLEQINTQHPDL
IAKFGGHAMAAGLTILERDFERFKMAFTDAASAILTEEHKQSVLLTDGELPATCFNLDFA
QLLQQAGPWGQQFPEPVFEGVFELIQQRIVGEKHLKLVLKHCSGQLVDAIAFNIDVKAWP
NTAAQYAKLAYQLDINEFRGKFSLQLLVREIQAQPA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccgtgatagcaacacgtgagcgcgtggatgacagtcatcttcctgcgcatctt
catcctgtaattaaacaaatctatgcagctcgcggtgtaagcgaccctgttgagctagat
aatcgtgctagcaccttattaaatttcaacttattcaaagatatggataaggcctgtgct
ttgttagttgaagcattgcaacagcaaagtaaagtcttaatcgttggtgactttgatgcc
gacggcgcaaccagtacctcggtattgatggaagggttagcattattcggtttccagcat
gtcgattatcttgtgccagatcgctttagtttgggttatggcttaagccctgcgctggca
gagcaaattgttaccatcgcgccagatctcgtgatcaccgtagataatggtatttcttgt
atcagtggcgttgagattgttaaaaatgccggtattaaagtacttattactgatcaccac
ttgcaaggtgagcaactcccaaatgccgatgccatcgtcaacccaaatcagcatagttgt
aacttcccttcaaaaagcattgcgggtgtgggggtggcgttttacttgttggtagcgctg
cgtcatagcctgcgcgagctgcaatactttgcgactcaacaacagcctgaaccaaattta
gcagagttactcgatattgttgcacttggcaccgttgctgacgttgtggcactcgatgcc
aataaccgcacgttggtttatcagggcctagcacgtattcgtagtggtaaaacgcgaccg
gggatcactgcactgattgaagtggcaaaacgcaatgcagcgcgtttatctgccagtgac
tttggttttgcactcgcgccgcgcctcaatgctgcgggccgactggatgatatgagtcta
ggtatcgcctgtttgttatcgaaagacatcaaccaagcaagacgcatagcaggcgagctt
gacgcacttaaccatgaacgccgtgaaattgaagcgggcatgcagcaagaagcgcaagct
gtgctggagcgcttggtatcgacacaacaaagcgtgcctgatgttgtctgtttatatcaa
gacgattggcaccaaggggtgatcggtattttagccgggcgcttaaaagagcgttatcac
cgtccggcaattatttttgcacaaggtgacgagggtgaaataaaaggctcatgtcgctct
atcgaaggcttgcatatgcgtgacctacttgagcaaattaacactcagcacccagaccta
attgctaagtttggtggtcacgctatggcggcaggtttaaccattttagagcgtgacttt
gaacgttttaaaatggcgtttactgatgctgccagtgcgattttgaccgaagagcataag
caaagtgtgttactgactgatggcgagttgcctgcgacctgtttcaatctagattttgcg
caactgcttcagcaagcagggccttggggtcagcaattccctgaacctgtatttgaaggc
gtatttgaactcattcagcagcgtattgtcggtgaaaaacacttaaaattggttctaaaa
cactgctctggtcagttagttgatgccatcgccttcaacattgatgtaaaagcttggcca
aatactgctgcacaatatgccaaattggcgtatcagctcgatataaatgagtttagaggc
aagttctcactgcaattattagtgcgagaaattcaagcacaacccgcataa
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