Pseudoalteromonas phenolica: PP2015_75
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Entry
PP2015_75 CDS
T04165
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP2015_75
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphe03021
]
PP2015_75
03019 Messenger RNA biogenesis [BR:
pphe03019
]
PP2015_75
Transcription machinery [BR:
pphe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PP2015_75
Messenger RNA biogenesis [BR:
pphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PP2015_75
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Fungal_virus_P2_C
AAA
AAA_25
AAA_22
S1CSD-TOTE-2
DUF961
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ALO40604
UniProt:
A0A0S2JX09
LinkDB
All DBs
Position
I:complement(86158..87417)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLRELKDKSINELVKLAESMGLENVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDTISGLIRPPKDGERYFALLKVNEVN
FDRPENSRTKILFENLTPIHANERFVMERGNGSTEDITARVLDLASPIGKGQRALIVAPP
KAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKADELQKMWILRKIVHEMSEIDAMEFLIDKLSMSKTNDEFFELMRRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttacgcgaattaaaagacaagtcaatcaacgaacttgtaaaactagctgagtcc
atgggacttgaaaacgtagcccgtctaagaaaacaagacatcatttttgccattctaaag
gcacatgctaaaagcggcgaaaacatttatggcggcggcgttttagaaattctacaagat
ggcttcggctttttacgttcatcagaagcctcttatttagctggccctgatgatatttat
gtttcaccaagtcaaattcgacgcttcagtatgcgtactggtgatacaattagtggtctt
atacgtccacctaaagatggtgagcgttacttcgcgctgttaaaagtaaatgaagttaac
ttcgatagacctgaaaactctcgcactaagatcttatttgaaaacttaacgcctattcat
gcgaatgagcgttttgtgatggaacgtggtaacggtagtactgaagatattactgctcgt
gttcttgatttagcatcaccaattggtaaaggtcagcgtgctttgattgtagctccgcct
aaagcgggtaaaacaatgctgctacaaaatatcgcgcaatcgattacctacaataaccca
gatgcaacactgatggtgttactgatcgatgagcgtccggaagaagttactgagatgcaa
cgccttgtaaaaggtgaagttgttgcttcaacattcgatgagccggcaagccgtcacgta
caagttgccgaaatggttatcgaaaaagcaaaacgcttagttgagcacaagaaagacgtt
atcatcctgcttgattcaatcacacgtttggcacgtgcttataacacggttattccttca
tcaggtaaggtactaacgggtggtgttgatgcgaatgcactacataaacctaagcgtttc
tttggtgctgcacgtaacgttgaagaaggcggtagtttgacaattattgcaacagccctt
atcgatactggctctaagatggatgaagtcatctacgaagagtttaaaggtacgggtaac
atggaattacacctaaaccgtaagattgctgaaaagcgtgtattccctgccattgacttc
aaccgctcaggcacgcgtcgtgaagaactactgactaaagccgatgagctgcagaagatg
tggatcttgcgtaagattgttcatgaaatgagtgaaatcgacgcaatggagttcctcatc
gataagctctcgatgagtaaaactaacgacgagttctttgaactcatgcgtcgtaagtaa
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