Pantoea phytostimulans: ACF2G4_01925
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Entry
ACF2G4_01925 CDS
T11029
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pphi Pantoea phytostimulans
Pathway
pphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACF2G4_01925 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphi03019
]
ACF2G4_01925 (rhlE)
Enzymes [BR:
pphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACF2G4_01925 (rhlE)
Messenger RNA biogenesis [BR:
pphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACF2G4_01925 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
AAA_30
P-loop_SecA
DUF6256
Motif
Other DBs
NCBI-ProteinID:
XLQ80247
LinkDB
All DBs
Position
396545..397912
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AA seq
455 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QKLSAKTGAVRGRRPVRALILTPTRELAAQVGENVSEYSKYLPLRSLVVFGGVSINPQML
KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLAEKLLHNPEEVAVARRNTASEQVSQQVYFVDKKRKRELLSQLI
GEGNWQQVLVFTRTKHGANHLAELLGKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERMLKREIPRVAMAGYEPDPSIKAEPIQNGRQQQQTRGGGGGRGRGPGGSSSSAPRSSGD
KRAPQPRRQGPASTTHGDKPAHPRRPAAAKRTGNV
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcctgagtgccgatattttgcgcgcggtcgctgaacaaggc
tacagcgaacccactcctattcagcgccaggcgattcctgtggtgctggcaggccgcgat
ctgctggcaagtgcccagaccggcaccggcaaaacggccggatttacgttgccgttattg
caaaagctcagtgctaaaacaggcgccgtgcgtggccgtcgtccggttcgcgccctgatt
ttgaccccaacccgtgaactggccgcacaggttggtgaaaacgttagcgaatacagcaag
tatttgccgctgcgttcgctagtggtatttggcggcgtgagcattaatccacagatgttg
aagctgcgtggcggcgtcgatatcctggttgctacgccaggccgtctgctggatctggtc
catcagaacgcggttgacctgtcacaggttgaagtgctggtactggacgaagcagaccgc
atgctggatatgggcttcatccacgacattcgtcgcgtgttggcaaaactgcccgccaag
cgtcaaaacttgctgttctctgccaccttctctgacgagatcaaaggtctggcggaaaaa
ctgctgcataatccagaagaggttgcagtggcgcgccgcaacacggcgtctgaacaggtt
tctcagcaagtttattttgttgataagaagcgtaagcgcgaactgctgtcccagctgatc
ggcgaaggcaactggcagcaggtgttggtctttacccgtaccaaacacggtgctaaccat
ttggctgaactgctcggcaaagatggcatcacagccgcagcgattcacggtaacaaaagt
cagggcgcgcgtactcgtgcactggctgacttcaaatcgggtggcattcgtgtgctggtg
gccacagacatcgctgcgcgtggcctggatattgaagagctgccgcacgtcgttaactac
gagctgccaaacgttgctgaagattacgtacaccgtatcggccgtaccggtcgtgcagcc
gcaaccggtgccgcactgtcgctggtctgcgtagatgagcacaaactgctgcgtgatatt
gagcgtatgctgaagcgtgaaattccacgcgtagcgatggctggttacgagcccgatcca
agcattaaagctgaaccgatccagaatggtcgccagcagcagcaaacgcgcggcggcggc
ggtggccgtggtcgcggcccaggcggttcatcttcttcagcgcctcgctcttcgggtgac
aaacgtgcaccacagccgcgtcgtcagggaccagcgtcaaccacgcatggcgataagcct
gcgcatccacgtcgtcctgccgctgcgaagcgtaccgggaacgtctaa
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