Pantoea phytostimulans: ACF2G4_03290
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Entry
ACF2G4_03290 CDS
T11029
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pphi Pantoea phytostimulans
Pathway
pphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACF2G4_03290 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphi03019
]
ACF2G4_03290 (rne)
03009 Ribosome biogenesis [BR:
pphi03009
]
ACF2G4_03290 (rne)
Enzymes [BR:
pphi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACF2G4_03290 (rne)
Messenger RNA biogenesis [BR:
pphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACF2G4_03290 (rne)
Ribosome biogenesis [BR:
pphi03009
]
Prokaryotic type
rRNA processing factors
ACF2G4_03290 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
XLQ80495
LinkDB
All DBs
Position
complement(685641..689006)
Genome browser
AA seq
1121 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPASYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPENMGLIVRTAGVGKSAESL
QWDLSFRIKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRME
TPHYSVLRVRTGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVAPAAPVAEAKPAVKAAPEAQANAAASTGFLGRLFGGLKKLFAGEETPAAAPAPAVE
TETEPKKASDDENGNQRGDRRNNRRNNNRRERTPRNGDNTQARDNREPRENREPRENREP
RENREPRDNNGDNRRNKRPSTPNDVREERPVLSDEARQQRDEQQQQRREQRAERQRRRQE
EKRAQQDAPKPVEVASVDIIEAPEALEDERVQVLPRRKPRQLTQKVRVGDAIEQPLVQAE
APVKQEEVRQVQPLIEAPQVEEQLDDTEGRDSNNMPRRSRRSPRHLRVSGQRRRRYRDER
YPTQSAMPLEAAAASPEMASGKVWVRYPVSQANEELATQDTQNEAPDYSRQETAAAVAIP
AAVESTEAVAPQQAPVQYAEPQAETPVAIVNTDDTTAIEAPVNEEPSVIPAAAEAKAEVI
AEQAKPAAPVIEAPSVQQPDAVSDAVSEPATETERSTAFTAPATEQPAEIAEHSAVEVSP
RLEAQVEEVLNAPVAADADVTPVSEPHAPVAARDSAPAVPNDGTRWKHFASAPMTKAPAP
IWQPEPVRHSDWVRPTYQFDGRGSAGGHSATHQSTAPATKP
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcaacgtctgtacgatctggatatcgaaagtcccggacacgagcagaaaaaggccaat
atctacaaaggtaaaatcacccgtattgaacccagccttgaagctgcgtttgtcgattac
ggcgctgaacgtcacggtttcctccctctaaaagaaatttcccgcgaatacttcccagcc
agttataactcacatggtcgtccgaacatcaaagacgtattgcgtgaaggccaggaagtg
atcgttcagatcgataaagaagagcgcggcaataaaggcgcagcgttaaccacctttatc
tctctggcgggcagctatttggtactgatgccaaacaacccgcgtgcgggtggtatctcg
cgtcgtatcgaaggtgacgatcgcactgagctgaaagaagcgctctcagcgctggaactg
ccagaaaacatgggtctgattgtgcgtaccgctggtgtcggcaaatcagccgaatcgctg
cagtgggacctcagcttccgcatcaagcattgggaagcgatcaaaaaagccgctgacagt
cgccctgctccgttcctgattcatcaggaaagcaatgtgattgtacgcgctttccgcgat
tatctacgccaggatatcggtgaaattcttatcgataatccaaaagttttggaactggca
cgtcagcatatcgctgcgctgggccgtccagacttcagcagtaaaattaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgagtcccagatcgagtccgctttccaa
cgcgaagtgcgtctgccatcaggcggctcgattgttatcgacagtaccgaagcgctgacc
gcgattgacatcaactcagcgcgtgcaacgcgcggtggtgacatcgaagaaaccgccttc
aacaccaaccttgaagccgcagacgaaattgcgcgtcaactccgtctgcgtgaccttggt
ggcctgattgttatcgatttcatcgatatgaccccggttcgccatcagcgcgcggttgag
aatcgcctgcgtgaagccgttcgccaggatcgcgcccgtattcaaatcagccatatttca
cgcttcggcctgctcgaaatgtcccgtcagcgcctgagcccgtcattgggcgaatccagt
catcacgtttgcccacgttgtagcggtaccggcactattcgtgataacgaatcgctgtca
ctctctattctgcgcctgattgaagaagaagcgctgaaagacaacaccaaagaagttcac
gcgatagttccggttcaggttgcctcttacctgctgaatgaaaaacgtgaagcggttaat
gctattgagaagcgtcagggtggcgtgcgtgcggttatcgtcccggatgatcggatggaa
acaccgcactattccgtgttgcgcgtccgtactggcgaagagacacaaacccttagttat
catttgccaaagctgcatgaagcagaaatggcgatgccgtctgaagaagaacacgctgaa
cgccgtcgtccagagcagcctgctcttgctgctttcgtgatgccagatgcaccaccagcg
cctgttgaagttgcgcctgcagcgccagttgcagaagcgaaacccgcggttaaggcggca
ccagaagcgcaagcaaacgcagcagccagcaccggtttcttgggtcgcttgtttggtggg
cttaaaaagctgtttgccggtgaagaaacgcctgccgctgcgcctgcacctgctgttgaa
accgaaactgagccgaaaaaagccagtgacgatgaaaacggtaatcagcgcggcgatcgt
cgtaataaccgtcgtaataacaatcgtcgcgagcgtacgccgcgtaacggtgataatacg
caagcgcgtgataaccgcgaaccgcgcgaaaaccgtgaaccgcgtgagaatcgcgaaccg
cgtgaaaaccgtgagccgcgtgacaacaatggtgataatcgccgcaacaagcgtccttca
acgccgaacgacgtgcgcgaagagcgtccagtcctgagcgatgaagcacgccagcagcgt
gatgagcagcagcagcaacgccgtgagcagcgtgccgagcgccagcgtcgtcgtcaggaa
gagaaacgtgcccaacaggacgcgccaaaacctgttgaagttgcatcggttgacatcatt
gaagctcccgaagcgctggaagatgagcgcgtacaggtgctgccgcgtcgtaaaccgcgt
cagcttacgcagaaagtgcgtgtgggtgatgccatcgagcagccgctggttcaggctgaa
gcgccagtcaagcaagaagaagtgcgccaggttcaaccgctgattgaagcgccgcaggta
gaagagcagttggatgataccgaaggccgtgacagcaacaacatgccgcgccgttcacgt
cgctcaccgcgccatctgcgtgtaagtggacagcgtcgtcgtcgctatcgtgatgagcgt
tatccaacgcaatctgctatgccattagaagctgccgcagcttcaccggaaatggcttca
ggtaaagtttgggtgcgttatcctgtcagtcaggctaatgaagagctggcgacacaagat
actcagaacgaagcgccagattacagccgtcaggaaacggccgctgcagtggcaattcca
gctgcagttgaatcaactgaagccgttgcaccacaacaggcgccggttcaatacgctgaa
ccacaagctgaaaccccggttgccattgtgaatacggatgacaccacggctatcgaagcg
ccagttaatgaagagccttcagtgattcctgctgctgcagaagctaaagcagaagttatt
gctgagcaggcaaaacccgctgctccggtgatcgaagcgccttcagtacagcaacctgat
gcagtttctgatgcagtttctgagccagcgaccgaaaccgaacgttctactgcgttcacg
gccccggccactgagcagccagcagagattgctgagcattcagccgttgaagtcagtccg
cgccttgaagcacaggttgaagaagtgctgaatgcgccagttgcagcggatgcagacgtt
acgccagtaagcgaaccgcatgcacccgtcgcagcgcgtgatagcgcccctgctgtgcca
aacgatggcactcgctggaagcacttcgcttctgcgccgatgaccaaggcacctgcgcca
atttggcagccagagcctgttcgtcatagcgactgggtacgtccgacttaccagtttgac
ggaagaggttctgctggcggtcacagcgcaactcaccagtcgaccgcgccggccaccaag
ccgtaa
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