Pantoea phytostimulans: ACF2G4_10415
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Entry
ACF2G4_10415 CDS
T11029
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pphi Pantoea phytostimulans
Brite
KEGG Orthology (KO) [BR:
pphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pphi03009
]
ACF2G4_10415 (rlmD)
Enzymes [BR:
pphi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACF2G4_10415 (rlmD)
Ribosome biogenesis [BR:
pphi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACF2G4_10415 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
PabTrmU54_TRAM_dom
TRM5-TYW2_MTfase
MTS
Methyltransf_23
Cons_hypoth95
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
XLQ78428
UniProt:
A0ACH3N3G1
LinkDB
All DBs
Position
complement(2240585..2241901)
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYTAKQRVTTKQRITVTIEDLDPFGQGVARHQGKTIFVSGALPGEQAEITLTEDKRQ
FARAKVTRLLSSSPARVTPRCPHFNTCGGCQQQHVDVVLQQQSKAQALSRMLSKEAQRVV
AVDEVIAGEPWGYRRRARLGLQWQNKSQQLRMGFRQEASNDLVDIQQCPILTPELEALIT
PLRQCLRELKAVKRLGHVELVQADNGPLMVLRHLDALHVDDREKLERFSHKHQLMMFLDD
GSENLTALSNNQPFYQSHKLKLTFSPQDFIQVNDAVNQQMVARAIDWLDLQPDDRVLDLF
CGMGNFTLPIGKVVQNAVGVEGVAALVRQAAYNADLNSLKNVSFFQHNLEEDVSRQPWAA
QGFNKVLLDPARAGAAGVMTHVVKLAPQRVVYVSCNPTTLARDSQTLLLAGYQLERVAML
DMFPHTRHLESMVLFKKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttacaccgcaaaacagcgtgtgacgaccaaacaacggattaccgtcacc
atcgaagaccttgatccatttggacaaggtgtcgcacggcaccaaggcaaaacgatattt
gtcagcggtgcgttgccaggcgaacaggcagaaattaccttaactgaggataagcgccaa
tttgcccgagcgaaagtcacgcgcttgttaagcagcagcccggcacgcgttacaccgcgc
tgcccacattttaatacctgtggtggctgccaacagcagcatgttgatgttgttttacag
cagcagagtaaagcgcaagcgctaagccggatgttaagtaaagaagcgcaacgcgtagtg
gccgtggatgaagttattgccggagaaccttggggctatcgccgccgagcacggctggga
ttgcaatggcaaaacaaaagccaacagctgcgaatggggtttcgtcaggaagccagtaac
gatctggtcgatattcagcaatgccccattttgacgcccgaacttgaggcgttgatcacg
ccgttacgccagtgtctgcgtgagttaaaagcggttaaaaggctgggacatgttgagctg
gtacaggcagataatggcccgctgatggttttacgtcatcttgatgcgctgcatgtcgac
gacagagaaaaactggaacgcttttcgcataagcatcagttgatgatgtttttggatgac
ggcagcgaaaacttaacggctctaagtaataaccaaccgttctatcaatcacacaaactt
aagttaaccttcagtccgcaagattttattcaggtaaacgatgcggtcaatcaacagatg
gtagcccgggcaattgactggctggatctgcaaccagacgatcgcgtattagatctgttt
tgcggcatgggaaacttcacacttccgataggaaaagtcgtacaaaatgcggttggtgtg
gagggcgttgcagcattagtacggcaggcagcgtataatgcggacttgaatagtcttaaa
aatgtcagctttttccagcataacctggaggaagatgtttcgcgccagccgtgggcggcg
caaggatttaacaaggtattactcgatccggcgcgtgccggtgccgcaggcgtgatgacg
catgtggttaaacttgcaccacaacgtgtggtctatgtttcgtgtaatcccacgacactc
gctcgcgacagccagacattgctgttggcgggctaccaattggaaagggtcgcgatgctg
gatatgttcccacatacccgtcatctcgaatccatggtgctgttcaaaaaaacataa
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