Pantoea phytostimulans: ACF2G4_15620
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Entry
ACF2G4_15620 CDS
T11029
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pphi Pantoea phytostimulans
Pathway
pphi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACF2G4_15620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphi03021
]
ACF2G4_15620 (rpoC)
03400 DNA repair and recombination proteins [BR:
pphi03400
]
ACF2G4_15620 (rpoC)
Enzymes [BR:
pphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACF2G4_15620 (rpoC)
Transcription machinery [BR:
pphi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACF2G4_15620 (rpoC)
DNA repair and recombination proteins [BR:
pphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACF2G4_15620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XLQ79382
LinkDB
All DBs
Position
3334161..3338384
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYSKNEQEEFVAKTSIIDTTIGRAILWMIVPQGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKVEIIAEAEAE
VTEIQQQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGVEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLMHEHICDLLEENSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGAAMAKGDGEQVAAGETVANW
DPHTMPVITEVGGYIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLSRVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEHYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIQSAGSADFLEGEQAEFSRIKIANRELEANGKVAATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERTRRRQIGEVPA
APQVTADEASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctaaaagcgcagactaaaaccgaagagtttaatgcgatc
aagattgcgctggcttcgccagacatgatccgttcatggtctttcggtgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagccagagcgcgatggtctgttctgtgcccgt
atctttgggccggtaaaagactacgaatgcctgtgcgggaagtacaagcgcctgaagcat
cgcggagtgatctgtgagaaatgcggcgttgaagtaacccaaactaaagtgcgtcgtgag
cgcatgggccacattgaactggcgtcgccaactgcgcacatctggttcctgaagtcactg
ccatcacgtatcggtttgctgctggatatgccactgcgcgatatcgagcgcgtgctctat
tttgaatcttacgttgttatcgaaggtggcatgaccaacctcgagaaacgtcagattctg
actgaagagcaataccttgatgcgttagaagagttcggtgacgaattcgacgctaaaatg
ggcgccgaagcgattcaggccctgttgaaaaacatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaaaaaactgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgcctgtattgccaccggatttgcgtccgctggtaccgctggacggcggccgcttc
gcgacttcagatctgaacgatctgtatcgccgcgtgattaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccagacatcatcgttcgtaacgaaaaacgtatgttgcag
gaagccgttgatgcattgctggataacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcgctcgctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactctggtcgttcggttatcaccgtaggtccatac
ctgcgcctgcatcagtgcggtctgcctaagaaaatggcacttgagctgttcaaaccgttc
atttacggcaagttggagctgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgaacgcgaagaagcggttgtctgggatatccttgacgaagtgatccgtgagcacccg
gttctgctgaaccgtgcgcctacgctgcaccgtctgggtattcaggcctttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctaacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgttctgggtctgtactacatgacccgcgacaaagtgaatgct
aaaggcgaaggcatggtgctgaccggccctaaagaagctgagcgtgtataccgcgctggc
ttggctgagctgcatgcacgcgtcaaagtgcgtatcactgaatacagcaaaaacgagcaa
gaagaattcgttgcgaaaaccagcatcatcgacaccaccattggtcgtgcgattctgtgg
atgatcgtaccgcaaggtctgccttactccatcgtcaaccaggcgctgggtaaaaaagct
atctctaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttatcttt
gctgaccagacgatgtacaccggtttcgcatacgctgcccgttcaggcgcgtctgtgggt
atcgacgacatggttattccagctaagaaagtggaaatcattgccgaagcagaagctgaa
gttactgagattcagcagcagttccagtctggtctggttaccgctggcgaacgttacaac
aaagtcatcgatatctgggctgccgcgaatgagcgtgtagcgaaggcgatgatggaaaac
ctctctactgaaaccgtgattaaccgtgacggcgtagaagagaaacaggtttcctttaac
agcatctttatgatggccgactctggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaaaccagatggctccatcattgaaacgccaattact
gcgaacttccgcgaaggcttgaacgtacttcagtacttcatctcgacgcacggtgcacgt
aaaggtcttgcggataccgcactgaaaacagctaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatttggttgttacagaagacgattgtggcacgcacgaaggcatc
atgatgacacctgtcatcgaaggtggcgacgttaaagagccgctgcgtgaacgtgttctt
ggtcgtgtaactgctgaagatgtattgaagcctggcaccgcagatattctggttccacgt
aacacgctgatgcatgaacacatctgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttctgtagtaggttgtgaaaccgattttggtgtgtgtgcgcattgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgctgcg
cagtccatcggtgagccgggtacacagctgacaatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcagctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
accaacgctaagtcggtaacgaactctgctggcaagctggtgatcacctcgcgtaacgtc
gaactgaaaatgatcgacgaattcggacgcaccaaagaaagctataaagtgccttacggt
gctgctatggcgaaaggtgacggcgagcaggttgctgcaggcgaaactgtagcgaactgg
gatccgcataccatgccggttatcacggaagtgggcggttatattcgcttcactgacatg
atcgatggccaaaccatcacgcgtcagacagatgacttaacgggtctgtcatcgctggtg
gtattggacagcgccgagcgtactgctggtggtaaagatctgcgtcctgcgctgaaaatt
gttgatgctaacggtgatgatgtcttgatcccaggcaccgacatgccagctcagtacttc
ctgccgggcaaagcgattgttcagctggaagatggcgtcaagatcagtgcgggtgatacg
ctgtcgcgtgttccgcaagaatctggcggtactaaggatattaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtcgcccgaaagagccagctatcctggcggagatcagc
ggtatcatctccttcggtaaagagactaaaggcaagcgtcgcttagtgattacaccagtc
gacggtagcgagcattacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgttgagcgtggtgacgtggtttccgatggcccagaatctccacatgacatc
ctgcgcttgcgtggcgttcatgcggtgacgcgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcgaccatccagagcgcgggcagtgccgacttcctggaaggtgagcaagca
gaattctctcgcatcaagatcgctaaccgcgaactggaagcgaacggaaaagttgctgca
acctttatgcgtgacctgctgggtatcaccaaagcgtcactggcaaccgaatcgttcatc
tctgccgcatcgttccaggaaacaacacgtgtcctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgtggcctgaaagagaacgtaatcgtgggtcgtctgatcccagccggt
accggttacgcttatcatcaggagcgtacacgtcgccgtcagattggcgaagtgccggca
gcaccgcaggtcactgcggatgaagcctcagcgagcctggctgaactgttgaacgccggt
ctcggcggtagcgacaacgattaa
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integrated database retrieval system
