Pantoea phytostimulans: ACF2G4_18220
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Entry
ACF2G4_18220 CDS
T11029
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pphi Pantoea phytostimulans
Pathway
pphi03030
DNA replication
pphi03430
Mismatch repair
pphi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACF2G4_18220 (dnaE)
03430 Mismatch repair
ACF2G4_18220 (dnaE)
03440 Homologous recombination
ACF2G4_18220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphi03032
]
ACF2G4_18220 (dnaE)
03400 DNA repair and recombination proteins [BR:
pphi03400
]
ACF2G4_18220 (dnaE)
Enzymes [BR:
pphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACF2G4_18220 (dnaE)
DNA replication proteins [BR:
pphi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACF2G4_18220 (dnaE)
DNA repair and recombination proteins [BR:
pphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACF2G4_18220 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
XLQ79863
LinkDB
All DBs
Position
3939809..3943291
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDYTNLCGLVKFYGSAHGA
GIKPVIGADFSVASELMGDELTQLTVLASNNVGYQNLTLLISRAYQRGYGIAGPVIDRDW
LVELQEGLILLSGGRCGDVGRCLLRGNTGLVSQCLNFYQQHFADRYYLELTRTGRQDEES
YLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPRKYSPQQYM
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMTTEDFLVMKSREGL
EERLEFLFPDEAVRVEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQNPLTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGEPPIDIAAIPLEDKKSFDML
QRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHDTLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKDGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVNPEGEIVYGIGAIKG
VGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
SLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQVQLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREIMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFGAAWRISPSD
RLLNDLRSLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctcgttttatacatttgcgtgtccacagcgactattcgatggtcgatggc
ttggcgaaaaccgggccattgatcaagaaagcggctgctttgggtatgcctgctattgcg
attaccgactataccaacctgtgcgggttagtgaagttctatggcagcgcgcatggcgca
gggataaagcccgtaatcggtgctgactttagcgttgccagcgaactgatgggcgatgaa
ttaacgcagttgacagtgttagccagcaacaatgtcggttatcaaaatcttactttactc
atttcgcgtgcctaccagcgtggttatggcattgccggcccagtcattgaccgtgactgg
ttggttgagttacaggaaggcttaattctgctttcagggggacgctgtggtgatgtgggc
cgctgcctgttacgtggtaataccggtctggtttcgcaatgcctgaatttttatcaacag
cattttgccgatcgctattatcttgagcttacacgcaccggacgtcaggatgaagaaagc
tatctgcatgcagccgttgagctagccatcgccgaaggcattccagtcgtagcgaccaac
gaagtttgcttcattaatgaagaagattttgacgcacacgaaatccgcgttgctattcac
gatggttacacgctggatgatcctaaacgtccacgcaaatacagtcctcagcaatacatg
cgtagcgaagaggagatgtgcgagctgttctcggacattcctgaagcgctggaaaacagc
gtagagattgctaagcgttgtaacgttacggtgcggttgggcgaatacttcttgccacaa
tttccgaccggcgaaatgaccaccgaagatttcctggtaatgaagtcgcgtgaagggtta
gaagagcgtctcgaattcttgttcccagacgaagccgttcgcgttgagaaacgcccagaa
tatgatgaacgcctggaaatagagcttaacgtaatcaaccagatgggcttccccggctac
ttcctgatcgtaatggaatttatccagtggtcgaaagataacggcgtgcccgtcgggccg
ggtcgtggttctggtgctggctctttggtggcgtatgcactaaaaattaccgatctcgat
ccgctggagtttgatctgctattcgaacgcttcctcaatccggaacgtgtatcgatgcca
gacttcgacgtcgacttctgtatggagaagcgcgatcaggttattgagcacgttgccgat
atgtatggccgcgaagcggtatcgcaaatcatcaccttcggtaccatggcggcaaaagcg
gttattcgtgatgtagggcgtgtattgggccatccatacggtttcgttgatcgcatttct
aaactcattccacctgatcctggcatgacgctggaaaaagcatttgctgctgaaccgcag
ttgccagaaatttacgaggcggatgaagaagtccgggcgctgattgacatggcgcgcaag
ctggaaggcgtgacgcgaaatgccggtaaacacgccggtggtgttgttatcgcacccact
aaaatcaccgattttgcaccgctttattgcgatgagaacggccagaatccactgactcag
tttgataaaaatgatgttgaatatgctggcttggtgaagttcgacttccttggcctgcgt
acgttaaccatcattaactgggcgctggaaatgatcaacgcccgacgcgagaagcagggc
gagccgcccatcgatattgcggcgattccgttagaagacaaaaaaagtttcgatatgctg
cagcgcgcggagaccacagcggttttccagcttgaatcgcgcggcatgaaagatttgatc
aaacgccttaagcctgactgttttgaagacatgatcgcattggtggcgctgttccgtcct
gggccgctgcaatcgggcatggtggataactttatcgaccgtaaacatggtcgcgaagcg
atttcctatccagatattcagtggcagcacgacacgctgaagccagtgctggaaccgact
tatggcatcatcctgtatcaagaacaggtgatgcagatcgcccaagaactttccggttat
acccttggcggtgcagatatgctgcgtcgcgcgatgggtaaaaagaaaccggaagagatg
gccaagcagcgttctgtctttaaagatggcgcggagcggatgggcgtcgacggcgagctg
tcgatgaaaatcttcgacctggtcgaaaagtttgctggctacggctttaacaaatcgcac
tccgctgcttatgcattggtttcctatcaaacgctgtggctaaaagcgcactatccagcc
gaattcatggcagcggtaatgactgccgatatggataacacagagaaagtggttgggctg
gtggatgaatgctggcgcatgggactgaaggtcttgccgccagatattaactctggcttg
tatcagttccatgttaatccagaaggagagatcgtttacggtattggcgcgatcaaaggc
gtcggcgaaggcccaatcgaagcgatcattgatgcgcgtaacgaaggtggctatttccgc
gagctgttcgatctctgtgcgcgcactgacacgaaaaaaatcaaccgtcgcgtgatggaa
aaattgatcatgtccggtgcgtttgatcgccttggcccgcaccgcgccgcgctgatgagt
tcgctcagcgatgcgctaaaagctgccgatcaacatgccaaagccgaagcgattggccag
gcagatatgtttggtgtattggcggaagagccggagcaggttgaaaagtcttacgcgagc
gtcacaccgtggcctgaacaagtccaactggatggtgaacgtgaaacgttgggactgtat
cttaccggtcatcccatcaaccagtatttgaaagaaattgagcgctatgtcggcggtgta
cgtcttaaagatatgcatcccaccgatcgtggtaaaattactgtcgcggccggtctggtg
attgccgcgcgtgtaatggtgactaagcgcggcaaccgaattggtatttgtactttggac
gatcgttccggtcgtctggaagtcatgttatttaccgatgcgttagataaataccagcag
ttgctggagaaagaccgtatcctgatcgtcagcggacaggtcagctttgatgacttcagt
ggaggccttaaaatgaccgcccgcgaaatcatggacattgacgaagcacgcgaaaaatat
gcgcgtggtcttgctatctcgctgacggacaggcaaattgatgaccagctattaaaccga
ctccgccagtccctggaacctcatcgatcagggaccattccggtgcatctctactatcag
agagccgacgcgcgtgccaagctgcgctttggtgcagcgtggcgaatttcgcccagcgat
cgtttacttaatgatctgcggtcgttgatcggatcggagcaggtagaactggagtttgac
taa
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