Pseudomonas phenolilytica: HU825_03905
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Entry
HU825_03905 CDS
T08532
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HU825_03905 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_03905 (recD)
Enzymes [BR:
pphn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HU825_03905 (recD)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU825_03905 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
CbiA
AAA_28
DEAD
AAA_5
DUF87
ATPase
Terminase_6N
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UIP85709
LinkDB
All DBs
Position
complement(821079..822926)
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AA seq
615 aa
AA seq
DB search
MADTAATLAQLLLGALERAFIASLQRLEPTAPVPVLLAAALCCEALGKGDVCLPLARLAG
RRPWPEHDIRLPALADWRACLRASSLVGAPGAYAPLILDGERLYLARYQAYERQLAEQLL
ARAGDRSPVDEAQLGESLTRLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVV
RLLAALLEQPGGERLAIGLAAPTGKAAARMAEAIRHAKAELPVSDAVKAALPDEARTLHR
LLGSRGDSPRVRHDAANPLPLDVLVVDEASMVDLALMAKLVAALPPKARLILLGDKDQLA
AVEAGAVFAELCEGRGFDAEAAADLERITGQAVAVETPHSRLGDAVVLLTHSHRFAGGSG
IGELARRINGGDARGTLALLDEARADLRWNAAPAAPALVERLEASYRPYLQAAQQGDPAQ
AFAAFNDFRALTAQREGAFGVNGLNEALEARLRRRAGVPVRERWYAGRAVMVRQNDYALG
LFNGDIGLCLWTEFGWRVFFEGDEGHRAFAPARLPSHDSAFVMTVHKSQGSEFGDVLLAL
PEQPGPLLTRALFYTGITRAKRTVEIWALPARLTEAVNTRAERAAGLAERLAADPPATAK
PAEGASGAQGQLSLF
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaccgccgcgacgctggcgcaactgctgctgggtgcgctggaacgcgccttc
atcgccagcctgcagcgcctcgagccgacggcgccggtgccggtcctgctggccgccgcg
ctgtgctgcgaggcgctgggcaaaggcgatgtctgcctgccgctggcgcgcctggccggg
cgcaggccgtggccggagcacgatatccgcctgccggcgctggccgactggcgcgcctgc
ctgcgcgcctcgtcgctggtcggcgcgcccggcgcctacgcgccgctgatcctcgacggc
gagcggctctacctcgcccgttaccaggcctacgagcggcagctggccgaacagttgctg
gcgcgtgccggcgatcggtcgccggtcgatgaagcgcagctcggcgagagcctgacgcgg
ctgttcgccttcaatcagcagcgcccggactggcaacggctggccgcggcgcaggcggta
cgccggcggttggcggtgatctccggcggccccggcaccggcaagaccaccaccgtggtg
cgcctgctcgcggcattgctcgaacagcccggcggcgagcggctggccatcggcctggcg
gcgcccaccggcaaggcggcggcacgcatggccgaggcgatccgccacgccaaggccgag
ctgccggtcagtgacgcggtcaaggcggcgctgccggacgaagcgcgcaccctgcatcgc
ctgctcggcagccgcggcgacagcccgcgggtgcgccacgacgcggccaatccgctgccg
ctcgacgtgctggtggtggatgaggcgtcgatggtcgatctggcgctgatggccaagctg
gtcgccgcgctgccgcccaaggcgcggctgatcctgctcggtgacaaggaccaactcgcc
gccgtggaagccggcgcggtgttcgccgaactctgcgaagggcgaggcttcgatgccgag
gcggcggccgatctcgagcgcatcaccggtcaggccgtggcggtcgagacaccgcactcg
cgcctcggcgatgcggtggtgctgctgacgcacagtcatcgcttcgccggtggcagcggt
attggcgagctggcgcggcggatcaacggcggcgacgcgcgcggcacgctggcgttgctg
gacgaggcgcgggccgatctgcgctggaacgcggctcccgccgcgccggcgctggtcgag
cgcctggaggcgagttatcggccctacttgcaggccgcgcagcagggcgatccggcacag
gcgttcgcggcgttcaacgatttccgcgcactcaccgcgcagcgcgaaggcgccttcggc
gtcaacggcctcaacgaggcgctggaggcacggctgcggcgccgtgccggtgtgccggtg
cgtgagcgctggtatgccggccgcgcggtgatggtgcggcagaacgactacgcgctcggc
ctgttcaacggcgacatcggcctgtgcctgtggaccgaattcggctggcgggtgttcttc
gagggtgacgagggccatcgcgcgttcgccccggcgcgcctgccgagccacgacagcgcc
ttcgtcatgacggtgcacaagagccagggttcggagttcggcgacgtgctgctggcgcta
cccgaacagcccggcccgttgctgacccgcgcgctgttctacaccggcatcacccgcgcc
aagcgcacggtggaaatctgggcattgccggcgcggctgaccgaggccgtgaatacccgc
gccgaacgcgcggccgggctggccgaacggctggctgccgacccgcctgcgacggcgaag
ccggcggaaggcgcgagcggcgcgcagggtcagctcagtctgttctga
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