Pseudomonas phenolilytica: HU825_03910
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Entry
HU825_03910 CDS
T08532
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HU825_03910 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_03910 (recB)
Enzymes [BR:
pphn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HU825_03910 (recB)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU825_03910 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UIP85710
LinkDB
All DBs
Position
complement(822926..826474)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELR
ERIRARLATLLAVYDGTPSDDDFLNRLHARFPDDASRRRLLLAVHGFDEAAVFTIHGFCQ
RALQDAAFEAGGDFDSELTADDRELIDALLADAWRGELAAADPAWARLLAKQKITPQWLR
QRLRAHLGKPYLRVEPHEPPAPADSRAVEAAWQRAATLWQQNGNAWVEELDAHRGLSQST
HKALKFPLWRSELDAWFADPAALYDAPDGLLKFGARALAKACKKGFDAPDCALAQALDEL
ADHLAEALPAGRQRLVALQVALLARLNRELPERKAAQRLLAFDDLLNRLDQALQGPVGED
LAAALRSTYPLALIDEFQDTDPIQYAIFDRIYARGSGASLCFVGDPKQAIYAFRGADLAT
YLQARQQIDRPAYDLPVNHRSTPQLIDALNRLFARPRPFSEDGLDYPPVTAADKSRATLR
LQEDEAGAPLALVWLGDDALSKAEAAELAARDCARRIARQLAAAAEGRAGFEQDGQFSPL
KGGDIAVLVANHRQAALIAEQLAARGVPSVRRGRDSVWASEEAAELAAVLAAYAEPGREG
LLRHALATRLLGRSAVDLARCQDDQQQWDSEREAAERYHQLWQQQGFMRVFRAWLDEQAV
AERLLARLDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQRGGEGAGDEALLRLES
DAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNLDSARCHDEHGRPLLDLGSAELPDN
LQRARRETFAEQLRLAYVALTRARDRLWLHWGPVALPKAKKDGELPDEGLHSSALAWLLH
GRELAGADALGELGNHLAALDGAGLRGEVERLTQASAGSTACLPLETREASTADSLRAVA
PRQLARLERSLHSAWRIGSFSGLAAGLHMEAPDRDALVMPDAAEPGSGFFAFPRGARAGT
CLHAILEDWARGRGALAERVEPALQAFGLPLEWRDIAIAQLQQVLTTDLDGAGLTLAGLH
AARRLPELGFTFPVRQLDVTRLRALLADPASGLPAPLREAAARLEFDTLRGFLKGFIDLT
FEHDGRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLADF
RDEQLGGAFYLFLRGMPAAGVYFARPDDALLDALDRLFEEGH
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacctgctcgattcgcccttcgacggccgctcgctgatcgaggccagcgcc
ggcaccggcaagacctggacgctcaccgcgctctacgcccgcctgctgctggagcgccag
ctgtcggtggggcagatcctggtggtcacctacaccaccgccgccaccgccgagttgcgc
gagcgcatccgcgcgcggctggccacgctgctggcggtctatgacggcacgccgagcgac
gacgacttcctcaaccgcctgcacgcgcgcttccccgacgacgcctcgcgccggcgcctg
ctgctcgccgtgcacggcttcgacgaggctgcggtgttcaccatccacggcttctgccag
cgtgcgctgcaggatgccgcgttcgaggccggcggcgacttcgacagcgaactcactgcc
gacgaccgcgaactgatcgacgcgctgctggccgatgcctggcgcggcgagctggccgcc
gccgatccggcctgggcgcgcctgctggccaagcagaagatcaccccgcaatggctgcgc
cagcgcctgcgcgcgcacctgggcaagccgtacctgcgggtcgagccgcacgagccgccg
gcgcctgctgacagccgcgccgtcgaggccgcctggcagcgcgccgcgacgctctggcag
cagaacggcaacgcctgggtggaggaactcgacgcccatcgcgggctgagccagagcacc
cacaaggcgctgaaattcccgctctggcgcagcgaactggacgcctggttcgccgatccg
gcggcgctctacgacgccccggacggcctgctcaagttcggcgcgcgggcgctggccaag
gcctgcaagaagggcttcgacgcccccgactgcgcgttggcgcaggcgctggatgaactc
gccgaccacctcgccgaggcgctgccggccggccgccagcggctggtcgcgctgcaggtg
gcgctgctcgcacggctcaaccgcgagcttcccgagcgcaaggcggcgcagcgcctgctg
gccttcgacgacctgctcaaccgtctcgaccaggcgctgcaggggccggtgggcgaggac
ctggctgcggcgctgcgcagcacgtatccgctggcgctgatcgacgaattccaggacacc
gatccgatccagtacgccatcttcgatcgcatctacgcgcgcggcagcggcgcctcgctg
tgcttcgtcggcgaccccaagcaggcgatctacgccttccgcggcgccgatctggcgacc
tatttgcaggcccgccagcagatcgaccggccggcctatgacctgccggtgaaccaccgt
tcgacgccgcaactgattgatgcgctgaatcgcttgttcgcgcgcccgcggccgttctcc
gaggacgggctggactatccgccggtcaccgctgccgacaagtcacgcgccaccctgcgt
ctgcaggaagacgaagccggcgcgccgctggcgctggtctggctcggcgacgatgcgctg
agcaaggcggaggcggccgaactcgccgcccgcgactgtgcccggcgcatcgcgcggcaa
ctggccgccgctgccgagggccgcgccggcttcgagcaggacggccagttcagcccgctc
aagggcggcgacatcgccgtgctggtggccaaccaccggcaggccgcgctgatcgccgag
cagctggctgcccgcggcgtacccagcgtgcgccgcgggcgcgacagcgtctgggccagc
gaggaggccgccgagctggccgcggtgctggccgcctacgccgagccgggccgcgaaggc
ctgctgcgccacgccctggccacgcgcctgctggggcggagcgccgtcgatctggcgcgc
tgccaggacgatcagcagcaatgggacagcgagcgtgaggcggccgagcgctaccaccag
ctctggcagcagcagggcttcatgcgtgtgttccgcgcctggctcgacgagcaggcggtg
gccgagcggctgctggcgcgcctcgacggcgagcgccggctgaccaacctgctgcacctg
ggtgagctgctgcaggccgagagcctgctgcggccggggctggaaccgctgctggcgtgg
ttcaacgcccagcgtggcggcgaaggcgccggcgacgaggcgctgctgcgcctggaaagc
gatgccgaacgggtgcagatcgtcaccatccacaccagcaagggcctggagtacccactg
gtgttctgcccgttcctctgggacggcaagctgctgggcaagaatctcgacagcgcgcgc
tgccacgacgaacacggccggccgctgctggacctgggcagcgccgagctgccggacaat
ctgcagcgcgcgcgccgcgagacgttcgccgagcagctgcgcctggcctacgtggcgctg
acccgcgcgcgggatcggctgtggctgcactgggggccggtggcgctgcccaaggcgaag
aaggacggcgagctgcccgatgaaggtctgcatagcagtgccctggcctggctgctacac
ggccgcgagctggccggcgcggatgcgctcggcgaactcggtaaccatctggctgcgctg
gacggcgccggcctgcgcggcgaggtcgaacggctgacgcaggcgagcgccggcagcacc
gcctgcctgccgctggaaacccgtgaggcgagcaccgccgacagcctgcgcgccgttgcg
ccgcgacagctggcgcgccttgagcgcagcctgcacagcgcctggcgtatcggcagcttt
tccgggctggccgccggcctgcatatggaggccccggaccgcgacgcgctggtcatgccg
gacgcggccgagccgggcagcggtttcttcgccttcccgcgtggcgcgcgtgccggtacc
tgcttgcacgcgatccttgaagactgggcgcgtggccggggcgcgctggccgagcgggtc
gagccggcgctacaggccttcggcctgccgctggaatggcgcgacatcgccatcgcccag
ctgcaacaggtgctgaccaccgatctcgacggcgccggcttgacgctggccggcctgcac
gccgcccgtcgcctgccggagctgggtttcaccttcccggtgcgccagctcgacgtcacg
cgcctgcgcgcgctgctcgccgatccggccagcgggctgccggcgccgctgcgcgaggcg
gcggcgcggctggagttcgacaccctgcgcggctttctcaagggtttcatcgacctcacc
ttcgagcatgacgggcgctggtacatcgccgactacaagtccaactggctcggcccggac
gccagctactacggcggcgagcggctgttgcaggcgctcgccggcgaacactactacctg
caatacctgatctacctggtggcgctgcggcgtttcctgcgccagcgcctggcggatttc
cgcgacgagcagctgggcggcgccttctatctgttcctgcgcggcatgcccgcggccggg
gtgtatttcgcccgtcccgacgatgcgttgctcgatgcgctggaccggctgttcgaggag
ggacactga
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