Pseudomonas phenolilytica: HU825_05825
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Entry
HU825_05825 CDS
T08532
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn02025
Biofilm formation - Pseudomonas aeruginosa
pphn03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HU825_05825 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HU825_05825 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pphn02044
]
HU825_05825 (tssM)
Secretion system [BR:
pphn02044
]
Type VI secretion system
Imp/Vas secretion system core components
HU825_05825 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
DUF4131
AAA_29
Motif
Other DBs
NCBI-ProteinID:
UIP86080
LinkDB
All DBs
Position
complement(1214341..1217874)
Genome browser
AA seq
1177 aa
AA seq
DB search
MKTFFGKLGAVLRRTWVWSLLLVLLLAVVVWFVGPLLAVDDYRFWESSTARLLSISVLFL
GWGLAMVFASWRASARKKRDAEDQDVQEQLRRDGLIGEEQQELRHRFRQALRILKTSSLY
RGRSEKWRRELPWYLLIGPQGSGKTSLLDFSGLDFPLNRSEQQRLTKDVSGTRFADWYFA
DHAVLIDTAGRYLTQPDAAVDGSAWDTLLGLLRRRRARPLNGVLVNLPVDQLQGGSELEL
ENLARQTRQRLHEIHQRLSVDVPVYLVLSKADRILGFDEFFEQLSREESDQVLGASFRKE
QNGSDAQVVRQEFEELLRRLNSQVILRMHQERDTQRRGRILDFPHQLGQIGEHLSLFIEL
AFAGNRYQRASQLRGFYLTSAPQLREGLDPLTAGIGRQLGLASSALPTFRSGRARFINQL
LSRVIFPEAELAGLDQREVRRIDWGQRALYAGAFGCLLLIGGAWAMNFSGNHERLEQLRG
IAQQLGSERKSIEAGDEALRTLKALDASYAATEVFPPKDEVSWLRRGGLYQGEAVDPTLH
EAYRRDLEKLLLPRVGRQLEAQIRANLNDREQLLGSLRAYLMLNLAERRDAAFLKDWLAA
DWSLRHPGNAVAQQGLNTHFARLLEESFAPYQLNEKLVTKARAQLRSESLAAVVYRMLRD
QARNLPDYRLNTQLGPQAALFVGGDYTIPGFYTQQGYQKLFVAQGGDLVSEILRDNWVLG
EGDSLSAKDLSRLLVEMEQLYFRDYAAHWSEAIAQLNILPAGSAAQGAAQLAGLTAANSP
LLQLLLEIRENTRFAGVTEATAEAGELAEAAQGAGGKLGKAAKLATAAAEQAALLKNVPD
TARKALERRFAPLHQLLNENGAAGPELTASLQALDALQLQLASLAHASAPEQAAFEMAKA
RMGGQRDAINQLRNSAARLPQPLGKWLGLLAEDSWSLVLSDAYHYLNQRYRNELYASYRG
ALRERYPFSAHSASDVALADFREFFKAQGLADSFFERYLKPFVSGSAGQYRLRRVDGRGL
PLSEQFLAQMSRAQSIRRSFFAENPNEPLILFKLEPYSLDSSLGRADFRFGNQQLEYRHG
PIVQTAFRWPAEADDGRTSLVVEELGGRRVGIEKNTGPWSLFRLIDLMQVDYHSGRDVLM
LKADLGGLRANYLLHAQRSPNPFDLALLRGFKLPATL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgttcttcggcaaactcggcgccgtgctgcgccgaacctgggtctggagcctg
ctgctggtcctgttgctggcagtcgtggtgtggttcgtcgggccgctgctggcagtcgac
gactaccgattctgggaatcctcgaccgcccgcctgctgagcatcagcgtgctgtttctc
ggctggggcctggccatggtcttcgccagctggcgcgccagcgcgcgcaagaagcgcgac
gccgaggatcaggacgttcaggaacaactgcgccgcgacggcctgatcggcgaagagcaa
caggagttgcgccatcgcttcaggcaggcgctgcgtatcctgaagacctcgagcctctat
cgcgggcgcagcgagaaatggcgccgcgagctgccctggtacctgctgatcggccctcag
ggtagcggcaagaccagcctgctggacttctccgggctggattttccgctcaaccgcagt
gaacagcagcgcctgaccaaggatgtctccggcacccgctttgcagactggtacttcgcc
gatcatgccgtgctgatcgacaccgccggccgctatctgacccagcccgacgctgccgtc
gacggcagcgcctgggacaccctgctcggtctgctgcgcaggcgtcgtgcccgtccgctc
aacggcgtgctggtcaacctgccggtggaccagctgcagggcggcagtgaactggagctg
gagaaccttgcccgccagacccgtcagcgcctgcacgagatccatcaacgtctgagcgtg
gacgtgccggtctacctggtgctgagcaaggccgatcggattctcggtttcgacgagttc
ttcgagcagctgtcgcgggaggaaagcgaccaggtgctcggcgcaagtttccgcaaagaa
cagaatggcagcgacgcgcaggtcgtgcgccaggagttcgaggaactgctgcgccggctg
aacagccaggtgatcctgcgcatgcatcaggagcgcgatacccagcgccgtggccgcatc
ctcgacttcccccatcagctggggcagatcggcgagcatctgagcctgtttatcgaactc
gccttcgccggcaaccgttaccagcgtgccagccagctgcggggcttctacctgaccagc
gcgccgcaactgcgcgaaggtctcgacccgctcaccgccggcatcggtcgtcagctcggc
ctggccagcagtgcactgccaaccttccgcagcggccgtgcgcgcttcatcaatcagctg
ctcagccgggtgatcttcccggaagccgagctggcgggcctcgaccaacgcgaggtacgc
cgcatcgactggggccagcgtgccctctatgccggcgccttcggctgcctgctgctgatc
ggcggcgcctgggcgatgaacttctcgggcaaccatgagcgcctggaacagctgcgcggc
atcgcccagcaactcggcagcgagcgcaagtccatcgaggcgggagacgaggcgctacgt
acgctcaaggctctggacgcgagctatgcggcgaccgaggtgttcccgccgaaagatgag
gtgtcctggctgcgccggggcggtctgtatcagggcgaggcggtcgacccgacgctgcac
gaggcctaccgccgcgatctggagaaactgctgctgccacgtgtcggccggcagctggaa
gcgcagattcgcgccaacctgaacgaccgcgagcaactgctcggtagcctgcgcgcctat
ctcatgctgaacctggccgaacgccgtgatgcggcgtttctcaaggactggctggccgcc
gactggtcgctgcgccatccgggcaatgccgtggcgcagcaggggctcaacacgcacttt
gcgcgtctgctggaagaatcctttgcgccgtatcagctgaacgaaaaactggtgaccaag
gcccgtgcccagctgcgcagcgaatcgctggcggcagtggtgtaccgcatgctgcgcgat
caggcacgcaaccttcccgactatcggctgaacacccagctcggcccgcaggcggcactg
ttcgtcggcggcgactacacgattcccggcttctacacccagcaaggctaccagaagctg
ttcgtcgcccagggtggcgatctggtcagcgagatcctgcgcgacaactgggtgctgggc
gaaggcgacagcctcagcgccaaggacctcagccgcctgctggtggaaatggaacagctg
tatttccgcgactacgccgcacactggagcgaggcaatcgcccagctgaacatcctcccc
gccggcagtgcggcgcagggtgccgcgcagctcgccgggctcaccgccgccaactcgccg
ctgctgcaactgctgctggaaatacgcgagaacacccgcttcgccggtgtgaccgaagcg
accgccgaggccggcgagctggccgaagcggcgcaaggcgccggtggcaagctcggcaag
gcggccaagctggctaccgcggcagcggagcaggccgcgctactgaagaacgtaccggac
accgcacgcaaggccctcgaacgccgttttgcgccgctgcaccagctgctcaacgaaaac
ggcgcggctggtcctgagctgacggcaagcctgcaggcactcgacgccctgcaattgcag
ctggcctcgctggcccatgccagcgcaccggaacaggccgccttcgagatggccaaggca
cgcatgggcggccagcgcgatgccatcaaccagctgcgcaacagcgctgcacgcctgccg
cagccgctgggcaagtggctggggctgctggccgaggacagctggtcgctggtgctcagc
gatgcctatcactacctcaaccagcgttatcgcaacgagctctacgccagctaccgcggt
gccctgcgcgagcgctatccgttcagcgcccacagcgccagcgacgtcgccctcgccgac
ttccgcgagttcttcaaggcccagggcctggcggacagcttcttcgagcgctacctcaag
cccttcgtcagcggcagcgccggccagtatcggttacgccgggtcgacggtcgcggcctg
ccgctgtccgagcagttccttgcacagatgagccgggcgcagagcattcgccgcagcttc
ttcgccgagaaccccaacgagccgctgatcctgttcaagctcgaaccgtactcgctggat
tcgagcctcggccgggccgacttccgcttcggcaaccagcagttggaatatcgccacggg
cccatcgtgcagaccgcgttccgctggccggctgaagccgacgacggacgcaccagccta
gtagtggaggaactcggcggccgtcgcgtgggtatcgagaagaacaccgggccctggtcg
ctgttccgcctgatcgacctgatgcaggtggattaccacagcgggcgcgacgtgctgatg
ctcaaggccgacctcggcggtctgcgcgccaactatctgctgcatgcgcagcgctcgccg
aatccgttcgacctcgcgctgttgcgcggcttcaagctgccggcgacgctgtga
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