KEGG   Pseudomonas phenolilytica: HU825_05855
Entry
HU825_05855       CDS       T08532                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pphn  Pseudomonas phenolilytica
Brite
KEGG Orthology (KO) [BR:pphn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pphn03000]
    HU825_05855
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pphn02044]
    HU825_05855
Transcription factors [BR:pphn03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    HU825_05855
Secretion system [BR:pphn02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   HU825_05855
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 HTH_30 GAF_2 AAA_2 GAF GAF_3 AAA_16 HTH_50 HTH_28 AAA HTH_psq HTH_23 HTH_24
Other DBs
NCBI-ProteinID: UIP88506
LinkDB
Position
complement(1222151..1223659)
AA seq 502 aa
MFNQVPQPLRYAEALLGRFAGLARAANADSLLGGLVETAAQLSNCQLSQLYLLDATHTRL
TLSAEWHNGLLQPREATSLPSDYHGEQLLQYCLCQNQTLCLSELDSNLHASGFLPDSPAP
WRSLLCLPLQDEQQRVAGLLLTASTESRELHGFSGSLAQLGAFGLAQLHLLQRLRTPGST
APPAAPVSPCASGYGLIGDSSRMRAVYQLIGKVLHSPVNVLLTGETGTGKELVARAIHDC
GFRRSKPFIVQNCASLPEQLLESELFGYRKGAFTGADRDRSGLLDAANGGTLFLDEIGDM
PLLLQAKLLRVLQEGEVRPLGSTETHKVDVRIVAATHRDLRSQVENGLFREDLFYRLSHF
PIELPPLREREEDILRLARHFADKACAFLQRDLCRWSDAALERLAGYAFPGNVRELKGLV
ERAVLLCEGGELLPEHFNLHVEASLDSSLNLRERMERVERSLLMDCLRKNGGNQSQAARE
LGLPRRTLLYRMERLNISPADL
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgttcaatcaggtgccacagccgctgcgctatgccgaggccctgctgggccgtttcgcc
gggctggcgcgcgcggcgaacgccgacagcctgctcggtgggctggtggaaaccgcggcg
cagctgagcaactgccaactcagccagctctatctgctggacgccacccatacccgcctg
acgctctcggccgagtggcacaacggcctgctacagccgcgcgaagccaccagcctgccg
agcgattaccacggcgagcagctgctgcaatactgcctgtgccagaaccagaccctttgc
ctcagcgaactggacagcaatctgcacgcttcgggcttcctgccggacagcccggcgccc
tggcgcagcctgctctgcctgccgctgcaggacgaacagcagcgtgttgccggcctgctg
ctgacggccagtaccgaatcgcgcgagctgcacggcttcagcggttcgctggcccagctc
ggcgccttcggcctcgcccagctgcatctgctccagcgcctgcgtacacccgggagcacc
gcaccgcccgccgcaccggtcagcccctgcgccagcggttacggcctaatcggcgacagc
tcgcgcatgcgtgcggtctaccaattgatcggcaaggtgctgcacagcccggtcaacgtg
ctgctcacgggagaaaccggcaccggcaaggaactggtggcgcgcgccattcacgattgc
gggtttcgccgcagcaagcccttcatcgtgcagaactgcgcctcgctgcctgagcaactc
ttggaaagtgagctgttcggctaccgcaagggcgccttcaccggtgccgaccgcgaccgc
agcggcctgctcgatgcggcgaacggcggcacgctgttcctcgacgagatcggtgacatg
ccattgctgctgcaggccaagctgttgcgcgtgctgcaggaaggcgaagtgcgcccgctg
ggctccaccgaaacccacaaggtcgacgtgcgcatcgttgccgccacccaccgtgacctg
cgcagtcaggtggaaaacgggctgtttcgcgaggatctgttctaccgcctctcgcacttc
cccatcgaactgccgccgctgcgcgagcgtgaagaggacatcctgcgcctggcccggcat
ttcgccgacaaggcctgcgcgtttctccagcgcgatctgtgtcgctggtccgacgccgcg
ctcgagcgtctggcaggctatgccttccccggcaacgtgcgggaattgaaagggctggtg
gagcgcgccgtgctgctctgcgagggcggtgagctactaccggaacacttcaatctgcat
gtggaggcgagcctggacagcagcctgaacctgcgcgaacgcatggagcgggtcgaacgc
agcctgctcatggattgcctgcgcaagaacggcggcaaccagagccaggccgcccgcgaa
ctcggcctgccgcggcgcacgctgctgtatcgcatggaacggctgaatatcagcccggcc
gatctctga

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