Pseudomonas phenolilytica: HU825_07790
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Entry
HU825_07790 CDS
T08532
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU825_07790 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphn03021
]
HU825_07790 (rpoC)
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_07790 (rpoC)
Enzymes [BR:
pphn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU825_07790 (rpoC)
Transcription machinery [BR:
pphn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU825_07790 (rpoC)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU825_07790 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF3150
PPDFL
Motif
Other DBs
NCBI-ProteinID:
UIP86441
LinkDB
All DBs
Position
1651663..1655862
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLNQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARIKVRIHETVKERDGSVANNVRIVDTTVGRALLFQIVPAGLSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSREKVIDREGKEVEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLHMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTEEVLVPAGTLIDEQWVDFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVLVKNGGTIRL
HNLKYVERTDGALVAVSRSGELAVADDFGRERERYKLPYGAVISIKEGDKVDAGSVVAKW
DPHTHPIVTEMKGIVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
VDANGKDLLLPGTDVPAQYFLPANALVGVADGAEVSVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLEENERLSEEDKFVAKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSADEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgccctggcttcgcccgagatgatccgttcctggtccttcggtgaagtgaagaag
ccggagaccattaactaccgcaccttcaagccggagcgcgatggcctgttctgcgccaag
atcttcgggccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgtggtgtaatctgcgagaagtgcggcgtggaagtcgcgctggccaaggtgcgccgcgag
cgcatggcgcacatcgagctggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgatatcgagcgcgtgctctat
ttcgagagctacgtggtcatcgatccgggcatgaccacgctggaaaagggccagctgctg
aacgatgagcagtacttcgaggcgctggaagagttcggcgatgatttcgatgcccgcatg
ggtgccgaggccgtgcgcgaactgctcaaccagatcgacctggaacacgaaattggtcgc
ctgcgcgaagagatcccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctcaaactgatggaagctttccatggctcgggcaacctgcctgagtggatggtgctgacc
gtgctgccggtactgccgccggacctgcgtccgctggttccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgtgtcatcaaccgtaacaaccgtctcaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgcgctgctggacaacggccgtcgcggtcgggccatcactggttccaac
aagcgcccgctcaagtccctggccgacatgatcaagggcaaacaggggcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggtcgttcggtgatcaccgtcggcccgacc
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctggagctgttcaagccgttc
attttcggcaagctggaaatgcgcggcatggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagcttcccgaggtttgggacgtgctcgccgaagtcatccgcgaacatccc
gtgctgctcaaccgtgcgccgacgctgcaccgtctgggtatccaggcgttcgagccggtg
ctgatcgagggcaaggcgatccagctgcacccgctggtttgtgcggcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagctcagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctttcgccggccaacggtgaaccgatcatc
gtgccgtcgcaggacgtggttctgggtctgtactacatgacccgcgaagccatcaatgcc
aagggcgaaggtcgcgtgttcgctgacctgcaggaagtcgaccgcgtattccgtgccggt
gaagcctcgctgcacgcgcggatcaaggtgcgtatccacgagaccgtcaaggagcgcgat
ggtagcgttgccaacaatgtgcgcattgtcgataccaccgtggggcgtgcactgctgttc
cagatcgtgccggccggcctgtcgttcgacgtggtcaaccagccgatgaagaagaaggcg
atctcgaagctgatcaacctgtgctatcgcacggtggggctgaaggacaccgttatcttc
gccgaccagctgatgtacaccggtttcgcctactcgacgatttccggcgtttccatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcgcatcatcgacgccgctaccgaggag
gtgaaggagatcgagagccagtacgcttccggcctggtcacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggctaacgacgaagtgtccaaggcgatgatggccaac
ctctcgcgcgagaaggtcatcgaccgcgagggcaaggaagtcgagcaggattccttcaat
tcgatgtacatgatggccgactccggtgcgcggggctccgcggcacagattcgccagctc
gccggtatgcgcggcctgatggccaagccggacggttccatcattgagacgccgatcact
gcgaacttccgtgaaggtttgaacgtactgcagtacttcatctcgacccacggtgcgcgc
aagggtctggcggatactgcgctgaagactgcgaactccggttacctgactcgtcgtctg
gtcgacgtcgcgcaggatctggtggtgaccgagatcgactgcggtaccgagcaaggcctg
cacatgacgccgcacattgagggtggtgacgtagtcgagccgctgggcgagcgtgtgctc
ggtcgggtgattgcgcgtgacgtgctcaaaccgggtactgaagaggttctggtaccggcc
ggtaccctgatcgacgagcagtgggtggatttcatcgaactgaacagcatcgacgaagtg
atcgtgcgctcgccgatcagttgcgagacgcgttatggcatctgcgccaagtgctatggt
cgcgatctggcccgcgggcatcaggtcaacatcggtgaggcagtaggggttatcgctgcg
cagtccatcggtgagccgggtactcagctgaccatgcgtacgttccacatcggtggtgcg
gcgagccggacttctgccgtcgacaacgtgctggtgaagaacggcggtaccatccgcctg
cacaacctgaagtacgtcgagcgtaccgacggtgcgctggtggcggtttcccgctccggc
gaactggcagtggccgacgacttcggtcgcgagcgcgagcgctataagctgccgtacggc
gcggttatctccattaaggaaggtgacaaggtcgatgcgggctcggtagtcgctaagtgg
gatccgcacacccacccgatcgtgaccgaaatgaagggtatcgtgaccttcgtcggcatg
gaggagaacatcaccatcaagcgtcagaccgacgaactcaccggtctgaccaacattgag
gtgatggatcccaaggaccgtccggccgctggcaaggatatccgtccggcagtcaagctg
gtcgacgcgaatggcaaggatctgctgctgccgggtaccgacgttcccgcgcagtacttc
ctgccggccaacgccttggtcggtgtggccgacggcgcggaagtgagtgtgggcgacgtc
atcgcacgtatcccgcaggagacctccaagacccgtgacatcaccggtggtctgccgcgt
gtggctgacctgtttgaggcgcgtcgtccgaaggagccttcgatcctggcggaaatcagc
ggcaccatcagcttcggcaaggagaccaagggcaagcgccgtctggtcatcacgccgacc
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctcaacgtcttcgaa
ggcgagcaggtgaacaagggggaagtgatctccgacggtccgagcaacccgcacgatatc
ctgcgtctgctgggcgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtc
taccgcctgcagggtgtgaagatcaacgacaagcacatcgagaccatcctgcggcagatg
ctgcgcaaggtcgagatcaccgagtcgggtgattccagtttcatcaagggtgaccagatg
gaactgactcaggtgctggaagagaacgagcgtctgagtgaagaggacaagttcgtcgcc
aagtacgtgcgcgtcctgctgggtatcaccaaggcctcgctgtcgaccgaatcgttcatc
tccgcggcctcgttccaggagactacgcgggtactgaccgaggcagccgtcaccggcaag
cgcgattatctgcgcggcctgaaggaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaaaccggtccgc
gtgagtgccgatgaggtcgaagcggcgctgaccgaagcgctgaattccagcggcaactga
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