Pseudomonas phenolilytica: HU825_09860
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Entry
HU825_09860 CDS
T08532
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU825_09860 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphn03019
]
HU825_09860 (rhlB)
Enzymes [BR:
pphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU825_09860 (rhlB)
Messenger RNA biogenesis [BR:
pphn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU825_09860 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UIP86837
LinkDB
All DBs
Position
complement(2050429..2051850)
Genome browser
AA seq
473 aa
AA seq
DB search
MNEKAVLKALKKIFAKDEPQPAPITPAASSSAADTAQTQHTQPAQPDTKKAERAADKPRR
PRHSKPAAPAWKLEDFVVEPVEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTL
KGQDAIGRAQTGTGKTAAFLISTITQLLQTPPPKERYMGEPRALIIAPTRELVVQIANDA
LDLAKYTGLNVMSFVGGMDFDKQLKQLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMV
LDEADRMLDMGFIPQVRQIIRQTPMKGERQTLLFSATFTEDVMNLARQWTVNPAIVEIEP
ENVASDTVEQHVYAVAGSDKYKLLYNLISQNDWTRVMVFANRKDEVRRIEERLTKDGISA
AQMSGDVPQHKRIKVLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHR
IGRTGRAGASGTSISFAGEDDAFALPPIEELIGRKIHCEMPPAELLVPVPRSR
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaaggccgtgctcaaagcactcaagaaaatctttgccaaggacgagccccag
ccggcgcccataacgcccgccgccagcagctccgccgccgacactgcccagacgcagcac
acccagcccgcgcagccggacaccaagaaagccgagcgcgccgccgacaagccacgtcgc
ccgcgccacagcaaaccggccgctccggcctggaagctcgaagacttcgtagtcgagccg
gtcgaaggcaagacccgcttccatgacttcaagctcgcccccgagctgatgcacgccatc
caggatctgggcttcccgtactgcacgccgatccaggcgcaggtgctgggcttcacgctc
aagggtcaggacgccatcggccgcgcgcagaccggcactggcaagaccgcggccttcctg
atttccaccatcacccagctgctgcagacgccgccgcccaaggaacgctacatgggcgaa
ccacgcgcgctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaacgacgcg
ctggacctggccaagtacaccggcctgaacgtgatgagcttcgtcggcggcatggacttc
gacaagcagctcaagcagctcgaatcgcgcttctgcgacatcctggtcgccacgcccggc
cgcctgctggacttcaaccagcgcggagaggtgcatctggacatggtcgaggtgatggtg
ctggacgaggctgatcgcatgctcgacatgggcttcatcccgcaggtgcgccagatcatc
cggcaaacgccgatgaagggtgaacgccagaccttgctgttctccgcgaccttcaccgag
gacgtgatgaacctcgcccgccagtggacggtgaacccggccatcgtcgagatcgagccg
gaaaacgtcgccagcgacaccgtcgaacagcacgtctacgcggtggccggcagcgacaag
tacaagctgctctacaacctgatcagccagaacgactggacccgagtgatggtcttcgcc
aatcgcaaggacgaagtccggcgcatcgaagaacgcctgaccaaggacggcatcagcgcc
gcgcagatgtccggtgacgtgccacagcacaagcgcatcaaggttctggaaggcttccgt
gagggcaagatccgcgtcctggtggccaccgacgtcgccggtcgcggcattcacgtcgac
ggcatcagccacgtgatcaacttcaccctgccggaagatccggacgactacgtgcaccgc
atcggtcgtaccggccgtgccggtgccagcggcacttcgatcagtttcgccggcgaggat
gacgccttcgccctgccgccgatcgaggagctgatcgggcgcaagattcactgcgagatg
ccgccggccgagctgctggtgccggtaccacgcagccgttga
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