Pseudomonas phenolilytica: HU825_11925 Help Entry HU825_11925       CDS       T08532                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pphn  Pseudomonas phenolilytica Brite KEGG Orthology (KO) [BR:pphn00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pphn03400]     HU825_11925 Enzymes [BR:pphn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      HU825_11925     5.6.2.6  RNA 3'-5' helicase      HU825_11925 DNA repair and recombination proteins [BR:pphn03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     HU825_11925 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc DEAD WH_Lhr WH4_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 DprA_WH AAA_25 MarR_2 PhoH DUF5805 Peptidase_C32 Motif Other DBs NCBI-ProteinID:  UIP87227 LinkDB All DBs Position 2474808..2479124 Genome browser AA seq 1438 aa AA seqDB search MNTSRTDLLSLFHPAVAGWFARNFPAPTPAQAAAWPLIRAGRSTLVAAPTGSGKTLTAFL AAIDALVRQGLAEGGLVDGTQVLYVSPLKALSNDIHINLEQPLAGIGAELERLGLPPVAI RTAVRTGDTPQAERNAMRKRVPHILVTTPESLYVLLGSESGRQMLRDVRSVIVDEIHAIA GNKRGSHLALSLERLEALCERPLVRVGLSATQKPIEAVARFLAGTGRPCEIVDIGHGRAR DLALEVPPVPLEAVMSNDAWTLVYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGS GVVAAHHGSLAREQRLTAEQKLKRGELRVLVATASLELGIDIGDVELVCQLGSPRSIAAF LQRVGRAGHQVAGISKGRLFPSSRDDLIECAALLDAVRRGELDVLRIPQAPLDVLAQQIV AEVACREWPEATLLALIRRAMPYAALDEASYQALLTMLAEGYTTRHGARGAYLHRDLATR SLRARRGGRLIALTSGGTIADNADYAVLLEPQGLNIGTVNEDFAVESLAGDVFQLGNTSY RILKIEPGRVRVEDAQGTPPNIPFWLGEAPGRSDELSFAVARLREEIDQRLAAAEQAGDA RLEPAIAWLLDVLGLTEPAARQIVEYLARARSALGALPTQRRLIMERFFDESGGTQLVIH SPYGSRINRAWGLALRKRFCRTFNFELQAAATEDAIILSLSTSHSFALDEVWRYLHSASA EQVLIQALLDAPLFGVRWRWIATTALALPRMAGGRKVAPQLQRMKSEDLLATVFPDQVAC LENIVGEREIPEHPLVRQTLDDCLHEAMDSEGWLALLRRMESGEVELLARDLPAPSPLAM EVLGARPYAFLDDAPLEERRTQAVLARRWSDPQSAYDLGALDPLAIAAVSEEAWPEARSA DEMHEALMALGCIAETEAATQSQWPDWLAELARGGRATRLQVAHDRALWVALERLAWLRA IYPQAPCEPELQPPIGYDCELAEEDALVELLRARLSGFGPLPVPLIARPLALPASVVAQA LTRLEAQGYVLRGRFTPGASEDEWCERHLLARIHRYTIKRLRREIEPVERAEFMRFLADW QHLSAASRMQGREALDLLVEQLEGFQAAASAWESDLLPARLQDYGGHWLDELCRSGRIVW TRLAGRLKAGGGPVRGTPIVLLPRRQLAVWQALASGAPVAQLSSRAQRVLDCLQAHGALF FDELQHEAHLLRSELEDALGELVAAGQVNADSFAGLRALLTPASKRARTTRRSRGGAFIG GMADAGRWALVRRPVAAEALSASRSAVDGEALEHIARVLLRRYGVVFWRLLAREADWLPP WRELLRVYHRLEARGEIRGGRFVAGVAGEQFALPDALGLLREVRKRPPSGELLAVSAVDP LNQLGTLLPGNKVPALSGNRILYRDGVPLAALVAGKPQWLVELQAPEQELVRRALARR NT seq 4317 nt NT seq  +upstreamnt  +downstreamnt atgaacacctcgcgcaccgatcttctgagccttttccatcccgctgtggcgggctggttc gcccgcaactttccggcaccgacgccggcccaggccgcggcctggccgttgatccgcgcg ggacgctcgacgctggtggccgcgccgaccggctcgggcaagacgctgaccgcatttctc gctgccatcgacgcactggtgcgccagggactggccgagggcgggctggtcgacggcacg caggtgctctacgtctcgccgctcaaggcgctgtccaacgacatccatatcaacctggag caaccgctggccggcatcggcgccgagctggagcgcctcggcctgccgccggtggccatt cgcaccgctgtgcgcaccggcgacacgccgcaggccgagcgcaacgcgatgcgcaagcgg gtgccgcacattctggtcaccaccccggaatcgctctacgtgctgctcggttcggagtcc gggcggcagatgctgcgcgatgtgcgcagcgtgatcgtcgacgagatccacgccatcgcc ggcaacaagcgcggcagccacctggcgttgtcgctggagcgcctggaggcgctctgcgaa cggccgctggtgcgcgtcgggctatcggcgacgcagaagccgatcgaggcggtggcacgc tttctggccggcaccggacggccgtgcgaaatcgtcgatatcggccacggccgcgcgcgc gatcttgcgctggaagtgccgccggtaccgctggaagcggtgatgagcaacgacgcctgg acgctggtctacgaccgtcttgcggcgctggccggcgagcatcgcaccacgctggtgttc gtcaacacgcggcgcatggccgagcgcaccacgcggcatctggccgagcggctgggcagc ggcgtggtggccgcgcaccacggcagtctggcgcgcgagcagcggctgacggccgagcaa aagctcaagcgcggcgaactgcgggtgctggtcgctaccgcctcgctggagctgggcatc gacataggcgacgtggaactggtctgccagctcggctcgccgcgttcgatcgccgccttt ctgcagcgcgtcggccgcgccgggcatcaggtcgcggggatctccaaggggcggctgttt cccagctctcgcgatgacctgatcgaatgtgccgcgctgctcgatgcggtgcgccgtggc gagctggacgtgctgcgcattccgcaggcgccgctggatgtgctggcccagcagatcgtc gccgaggtggcctgtcgcgaatggccggaggcgacgctgctggcgctgatccgccgcgcc atgccctacgccgcgctggacgaggccagttaccaggcattgctgacgatgctcgccgag ggctacacgacccgccacggcgcccgcggcgcctatctgcatcgcgacctggcgacgcgc agcctgcgcgcccgtcgcggcggccggctaatcgcgctgacctccggcggcaccatcgcc gacaacgccgactacgcggtgctgcttgaaccccagggcctgaacatcggcacggtgaac gaggacttcgccgtggagagcctggccggtgatgtgttccagctgggcaatacctcctat cgcatcctcaagatcgagccggggcgggtgcgcgtcgaggacgcccagggcacaccgccg aacatcccgttctggctcggcgaggcgccgggccgcagcgacgagctgtcctttgccgtg gcgcgcctgcgcgaggagatcgaccagcgcctggccgcggccgagcaggccggcgatgcg cgcctggagccggccatcgcctggctgctggatgtgctcggtctcaccgagccggcggcg cggcagatcgtcgagtacctggcccgcgcgcgctcggcgctgggcgcgctgccgacccag cggcggctgatcatggagcgtttcttcgacgaatccggcggcacccagctggtcattcat tcgccctacggcagccgtatcaaccgtgcctggggactggcgctgcgcaagcgcttctgc cgcaccttcaacttcgagctgcaggcggcggcgaccgaggatgcgatcatcctgtcgctg tcgaccagccacagctttgcgctggatgaggtctggcgttacctgcattcggccagcgcc gagcaggtgctgatccaggcgctgctcgacgcgccgctgttcggcgtgcgctggcgctgg atcgccaccaccgcgctggcgctgccgcgtatggcaggcgggcgcaaggtggcgccgcag ctgcagcggatgaaaagcgaagacctgctggccacggtgtttcccgatcaggtggcctgc ctggagaacatcgtcggcgagcgcgagattcccgagcacccgctggtgcgccagaccctc gacgactgcctgcacgaggcgatggacagcgaaggctggctggccttgctgcggcgcatg gaaagcggcgaggtggagctgctggcgcgcgacctgccggcgccctcgccgctggcgatg gaggtgcttggcgcgcgtccctacgcctttctcgatgacgccccgctggaggagcgccgc acccaggcggtgctcgctcggcgctggagcgacccgcaatcggcctatgacctcggcgcg ttggacccgctggcgattgccgccgtcagcgaggaagcctggcccgaggcgcgctcggcc gacgagatgcacgaggcgctgatggcgctgggctgcatcgccgaaaccgaggccgccacg cagtcgcaatggcccgactggctcgccgagctggcgcgcggcggccgggcgacgcgcctg caggtcgcccatgatcgcgcgctatgggtggcgctggagcggctggcatggctgcgcgcg atctacccgcaggcgccgtgcgagcccgagctgcagccaccgattggctacgactgcgag ctggcggaagaggatgcgctggtggagctgctccgtgcgcggctgagcggcttcggcccg ctgccggtgccgttgatcgcccggccgctggccttgccggcctcggtcgtggcgcaggcg ctgacccgtctggaggcccagggctatgtgttacgcggccgcttcaccccgggagcgagc gaggacgagtggtgcgagcggcacctgctggcacgcatccatcgctacacgatcaagcgt ctgcgacgcgagatcgagccggtggagcgcgccgaattcatgcgttttctcgccgactgg cagcacctgtccgccgcgtcgcgcatgcaggggcgcgaggcgctggacctcttggtcgaa cagctcgaaggcttccaggcggctgcgagcgcgtgggagagcgatctgctgccggcgcgc ctgcaggactatggcggccactggctggacgagctgtgccgttcggggcgcatcgtctgg acgcggctggccgggcgcctgaaggccggcggcgggccggtgcgcggcacgcccatcgtg ctgctgccgcggcgccagctcgcggtctggcaggcgctggccagcggcgcgccggtggcc cagctgtcgtcgcgggcacagcgggtgctcgattgtctgcaggcgcacggtgcgctgttc ttcgacgagctgcagcacgaggcacacctgctgcgcagcgagctggaggatgcgctcggc gaactggtggcggcggggcaggtgaacgccgacagcttcgccggcctgcgtgcgctgctg acgccagcgagcaagcgtgcgcgcaccacgcgccgcagccgcggcggcgcgttcatcggt ggcatggctgacgccggtcgttgggcgctggtgcgcaggccagtggcagccgaggcgcta tcggccagccgatccgctgtcgatggcgaggcactagagcatatcgcccgggtgctgctg cgccgctacggcgtggtgttctggcgactgctggcgcgcgaggcggactggctgccgccc tggcgtgagctgttgcgggtgtatcaccggctggaagcgcgtggcgagattcgcggtggg cgcttcgttgcgggcgtggccggcgagcagttcgcgttgccggacgcgctcgggctgctg cgggaggtgcgcaagcgcccaccctccggcgagctgctggcggtatcggcggtcgatccg ttgaaccagctgggcacgctgctgcctggcaacaaggtgccggcgttgtcgggcaaccgc attctctaccgcgacggcgtgccgctggcggcgctggtggcaggcaagccgcagtggctg gtcgagctgcaggcgccggagcaggagctggtcaggcgcgcgctggcgcggcgctag

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