Pseudomonas phenolilytica: HU825_12520
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Entry
HU825_12520 CDS
T08532
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03030
DNA replication
pphn03430
Mismatch repair
pphn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU825_12520 (dnaE)
03430 Mismatch repair
HU825_12520 (dnaE)
03440 Homologous recombination
HU825_12520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphn03032
]
HU825_12520 (dnaE)
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_12520 (dnaE)
Enzymes [BR:
pphn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HU825_12520 (dnaE)
DNA replication proteins [BR:
pphn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HU825_12520 (dnaE)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HU825_12520 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UIP87329
LinkDB
All DBs
Position
2599807..2603328
Genome browser
AA seq
1173 aa
AA seq
DB search
MSVSFVHLRLHTEFSLVDGLVRVKPLTKAVAGTGMPAVAVTDQSNMCSLVKFYKAAQGAG
IKPICGADIWLASREEDGPLSRLTLLVMDAKGYRNLTELVSRGWTEGQRNDLVVIERDWV
KQAAEGLIALSGAKEGEIGQALLNGDEGLAEALLKEWSEVFAERFYLEVQRTSRVNDEEY
LHAAVALAGRCGAPLVATNDVRFLRQEDFEAHETRVCIGEGRTLDDPRRPRNYSDQQYLK
TPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPAGMTIDDYLRQVSYEGL
EERLEVLLPKDTPDYAAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVPVG
PGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVA
EAYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEMEE
PLRDFLAVDEDAREIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLVT
QFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQTKKGLEPVNIDFIPLDDKPTYQL
LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA
EVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEE
MAKQRGGFIEGCANNGIDGELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYP
SPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVK
GVGEGPVEAIAECRAAGGPFKDLFDFCSRVDLKRINKRTLEALIRSGALDRLGPYFHEEA
KAYQANIDRNRAVLLAAMEEAVQAAEQTARSEESGHMDLFGGLFAEPEADVYANHRKARE
LSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVDLRPARDTQTVAGLIVNLRVM
KNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQALLQTDALVVVEGEVSNDDFSGGLRLR
AKRVMSLEEARTGLAESLRVKVASEALKGDRMRWLADVFGRHRGACPITLEYTGADARAL
LQFGENWRIDPADNLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtttcgttcgtccatcttcgtctgcataccgagttttcgctggtcgacggtctg
gtgcgcgtcaagccactgaccaaggcggtcgccggcaccggcatgccggccgtggcggtg
acggatcaaagcaacatgtgttcgctggtcaagttctacaaggcggcgcagggcgccggg
atcaagcccatctgcggcgccgacatctggctggccagccgtgaggaggatggtccgctg
agtcggttgacgttgctggtgatggacgccaaggggtatcgcaacctcaccgagctggtt
tcccgtggctggaccgaaggccagcgcaatgacctggtcgtcatcgagcgcgactgggtc
aagcaagcggcggaaggtttgatcgcactgtcaggagccaaggagggggagatcggccag
gccctgctcaatggtgacgaagggctggccgaggcgttgctgaaggaatggagcgaggtg
tttgccgagcgcttctacctggaagtgcagcgcaccagccgggtcaacgacgaggagtat
ctccatgccgcggtggcgctcgccgggcgctgcggtgcgccgctggtggcgaccaatgac
gtgcgctttctccggcaggaagatttcgaggcccatgagacgcgagtctgcatcggcgag
gggcgcaccctcgatgacccgcgtcgcccgcgcaactattccgaccagcagtatctgaag
accccggaggagatggccgagctgttcgccgatctgccggaggcactggaaaacaccgtc
gaaattgccaagcgctgcaacatcgaagtccagctgggcacctacttcctgcccaacttc
ccggtgcccgccgggatgaccattgatgactacttgcgccaggtctcttacgaggggctg
gaagagcgtctggaagtcctgctgcccaaggacacgcccgattacgcggcgaagaagcag
gtgtacatcgaccgcctcgagttcgaattgggcaccatcatccagatgggcttcccaggg
tacttcctgatcgtaatggacttcatcaagtgggcgaagaacaacggcgtgccggtgggg
cctggccggggttcgggcgctggctcgctggttgcctacgtgctgaagatcaccgacctc
gacccgctggcctacgatctgctgttcgagcgcttcctcaaccccgagcggatttcgatg
cccgacttcgacgtcgacttctgcatggatggccgcgaccgtgtgatcgactacgtggcc
gaggcctatgggcgcaacgccgtgagccagatcatcaccttcggctcgatggcggccaag
gcagtggtgcgcgacgtcgcgcgggtgcagggcaagtcctatggtctggccgatcgcttg
tcgaagatgattcccttcgaagtcggtatgaccctggaaaaggcctacgagatggaggag
ccgctgcgcgatttccttgccgtcgacgaggacgcccgggaaatctgggacatggcgctc
aagctcgaaggcatcacccgcggcaccggtaagcacgctggcggtgtggtcatcgctccg
accaaactcacggatttcgcgccgatcgcctgtgacgaggagggtggcggcctggtgacc
cagttcgacaaggacgatgtcgagcaggccggcctggtcaagttcgacttcctcggcctg
cgcaccctgaccatcatcaagtgggcgctggaaaccatcaaccgcgagcagactaagaag
gggctggaaccggtcaatatcgacttcatcccgctggacgacaagccgacctaccagctg
ctgcagaaggccgagaccacggccgtgttccagctcgaatcgcgcggcatgaaggagctg
atcaagaagctcaagcccgactgtctggaagacctcatcgcactggtggcactgttccgc
cccggcccgctgcagtcgggcatggtggacgatttcatcaaccgcaagcacggtcgtgcc
gaagtttcctatccgcacccggactaccagtacgcgggcctggagccagtgctcaagccc
acctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtcatggccggc
tatacccttggcggcgcagacatgctgcgtcgcgccatgggcaagaagaagccggaagaa
atggccaagcagcgcggcggctttatcgagggctgcgccaataacggtatcgatggggag
ctggcgggcaacatcttcgatctggtggagaaatttgccggctacggtttcaacaagtcg
cactcggccgcctacggcctggtctcgtaccagaccgcctggctcaaggcgcattacccc
tcgccgttcatggccgcagtgctctcggcggatatgcacaacaccgacaaggtggtgatc
ctcatcgaggaatgccgcagcatgaagctgcgcatcgatccgcccgatgtgaacgtctcc
gagttcaagttcaccgtcaacgacgatggccgcatcgtctacggcttgggcgcggtcaag
ggcgtcggcgaaggcccggtcgaagcgatcgccgagtgccgcgccgcaggcggaccattc
aaggatctgttcgatttctgcagtcgcgtggacctgaaacgcatcaacaaacgcacgctg
gaagcgctgatccgttccggtgcgctggatcgcctcgggccgtacttccatgaggaagcc
aaggcctatcaagccaacatcgaccgtaatcgcgcggtgctgctggcggcgatggaagag
gcggtgcaggccgccgagcagacggcacgcagcgaagaaagcggccacatggacctgttc
ggcgggctgttcgccgaacccgaggcggatgtctacgccaatcaccgcaaggcgcgtgaa
ctgtcgctcaaggagcgtttgaagggggagaaagataccctcgggctgtatctcaccggc
catcccatcgacgagtacgagggcgaggtgcggcgcttcgcccggcagcgcatcgtcgac
ctgcggccggcgcgtgacacccagaccgtcgccgggctgatcgtcaacctgcgggtgatg
aagaacaagaaaggcgacaagatggggttcatcactcttgatgaccgctccggacgtatc
gaggcatcgctgttcgctgaagccttcaacaccgctcaggcgctgctgcagacggatgcg
ttagtggtggttgaaggcgaagtcagcaacgacgatttctctggaggcctgcgcctgcgg
gccaagcgggtgatgagtctggaggaggcgcgtaccgggttggccgaaagcctgcgggtc
aaggttgccagcgaggcgctcaaaggcgatcggatgcgctggcttgccgatgtattcggg
cggcatcgtggtgcctgtccaatcacgctcgagtacaccggggccgatgcgcgtgcgctg
ctgcagttcggcgagaactggcgtatcgatccggcagacaacttgattcaggcgttgcgt
gaccagttcggacgcgacaacgtcttcctgcaataccgatga
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