Pseudomonas phenolilytica: HU825_12980
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Entry
HU825_12980 CDS
T08532
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pphn
Pseudomonas phenolilytica
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphn03032
]
HU825_12980 (topA)
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_12980 (topA)
Enzymes [BR:
pphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU825_12980 (topA)
DNA replication proteins [BR:
pphn03032
]
Prokaryotic type
DNA Topoisomerases
HU825_12980 (topA)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU825_12980 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF2399
Motif
Other DBs
NCBI-ProteinID:
UIP87407
LinkDB
All DBs
Position
2695648..2698248
Genome browser
AA seq
866 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASKEPAKRGKAAAGETPA
LSPKEKAKRQLFARMGVDPEHDWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG
EAIAWHLRESIGGDDTRYKRVVFNEITKKAIQEAFAQPGELDINRVNAQQARRFLDRVVG
YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLATTQQAKVRF
EVARQNGEAFKPLNEAQATAALEKLKSSSYRVSKREDKPTSSKPSAPFITSTLQQAASNR
LGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIAMVRGFIESEFGGKYLPEKANVYS
SKEGAQEAHEAIRPSDVNLRPNQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSVTAT
AGEFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPDMQQGEALALLKLDPSQHFTKPPAR
YSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSESFEN
LMDYGFTAGMEEHLDDVAQGEREWKHVLDEFYGDFKRKLEQAEGSENGMRANQPTLTDIP
CKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTINLVPGDEIAADDEGESESLVLLGK
HRCPICSTAMDAYLLDEKRKLHICGNNPDCSGYEIEEGQYRIKGYEGPSLECDKCGSEMQ
LKTGRFGKFFGCTNAECKNTRKLLKNGEPAPPKMDAVKMPELRCEKVDDTYVLRDGASGL
FLAASQFPKNRETRAPLVKELIPHRDEIDPKYHFLLDAPQQDAEGRPTVIRFSRKTKEQY
VQSEVDGKPTGWKAFFVGGKWKVEEK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggtcatcgtggaatcaccggccaaggccaagacaatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgcgaccttcccaccagc
ggttccgccagcaaggagccggcaaagcgcggcaaggccgccgctggcgagacgcccgcc
ctgtcgcccaaggagaaggccaagcgtcagctgttcgcgcgcatgggcgtcgacccggag
catgactggaaggccaagtacgagatcctgccgggcaaggagaaggtgatcgaggagctg
cgtcgcctggccaaagaagccgataccatctatctcgcgaccgacttggatagagaaggg
gaggcgatcgcctggcacctgcgcgaatccatcggcggcgacgacacccgctacaagcgc
gtggtattcaacgaaatcaccaagaaggcgatccaggaggcgttcgcgcagcccggcgaa
ctcgacatcaatcgcgtcaatgcccagcaagcccgacgtttcctcgaccgcgtggtcggt
tacatggtgtccccgctcctgtgggcgaagattgctcgcggcctgtccgccggtcgggtg
caatcggtggcggtgaagctggttgtggagcgcgagcgtgaaatccgcgccttcgtgccg
gaagaatactgggaagtgcatgccgacctggcgaccacgcagcaggctaaggtgcgcttc
gaggtggcccgccagaacggtgaggcattcaaaccactgaacgaggcgcaggccaccgca
gcgctggagaaactcaagagctcgagctaccgcgtcagcaagcgcgaggacaagccgacc
tccagcaagccatcggcgccgttcatcacctcgaccctgcagcaggctgcgagcaaccgc
ctcggcttcggcgtgaagaagaccatgatgatggcgcagcggctctacgaggcgggctac
atcacctacatgcgtaccgactcgaccaacctctcggccgacgccatcgccatggtacgt
ggctttatcgagagcgagttcggtggcaagtacctgcccgagaaggccaatgtctattcg
agcaaggagggcgcgcaggaggcgcacgaggcgatccgcccgtctgatgtcaatctgcgc
cccaaccagctttcgggaatggagcgcgatgccgagcgcctttacgagctgatctggcgc
cagttcgtggcttgccagatgccgccggcccagtacctgtccaccagcgtcacggcaacg
gccggcgagttcgagctgcgtgccaagggccgcattctcaagttcgacggctacaccaag
gtcatgccgcagcagagcaaggccggcgaggacgacgtgctcccggatatgcagcagggc
gaagcgctggcgctgctcaagctcgacccgagccagcacttcaccaagccacccgcgcgc
tactcggaagccagcctggtcaaggagatggagaagcgtggtatcggtcgtccgtccact
tatgcggcgatcatttccacgattcaggatcgcggctacgtctcgctgcacaaccgccgc
ttctattcggaaaagatgggcgacatcgtcaccgaacgcctttccgagagcttcgagaac
ctgatggactacggcttcaccgccggcatggaagagcatctggacgacgtcgcgcagggc
gagcgcgaatggaagcacgtgctcgatgagttctatggcgacttcaaacgcaagctcgag
caggcggagggcagcgagaacggcatgcgcgccaaccagccaaccctgaccgacattccc
tgcaaggtctgcggccggccgatgatgatccgcaccgcgtccaccggcgtgttcctcggc
tgctctggctacagccttccgcccaaggaacgctgcaagtcgacgatcaacctcgtgcct
ggtgacgagatcgctgcagatgacgagggtgaatcagaatccctggtactgctgggcaag
catcgctgtccgatctgcagcacggcgatggatgcctatttgctcgatgagaagcgcaag
ctgcatatctgcggtaacaaccccgattgctcgggctacgagatcgaggaaggccaatac
cggatcaagggctacgaaggcccaagcctggaatgcgacaagtgcggcagcgagatgcag
ctcaagaccggtcgtttcggcaaattcttcggctgcaccaacgccgaatgtaagaacact
cgtaagctgctgaagaacggcgagccggcgccgccgaagatggatgctgtgaagatgccg
gagctacgttgcgagaaagttgacgacacctacgtactgcgtgacggtgcatcggggctg
ttcctggccgccagccagtttccgaagaaccgcgagacacgtgctccgctggtgaaggag
ctgatcccgcaccgtgacgagatcgatccgaagtaccacttcctgctggacgcaccgcag
caggacgcagaaggtcgcccgacggtgatccgcttcagccgcaaaaccaaggagcagtac
gtgcaatcggaagtcgacggcaagccgaccggctggaaggccttcttcgtcggcggtaag
tggaaggtcgaggagaagtaa
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