Pseudomonas phenolilytica: HU825_15280
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Entry
HU825_15280 CDS
T08532
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pphn
Pseudomonas phenolilytica
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphn03032
]
HU825_15280
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_15280
Enzymes [BR:
pphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU825_15280
DNA replication proteins [BR:
pphn03032
]
Prokaryotic type
DNA Topoisomerases
HU825_15280
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU825_15280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF3336
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
UIP87829
LinkDB
All DBs
Position
3203001..3204107
Genome browser
AA seq
368 aa
AA seq
DB search
MRNPAEGPKLPPQATGIRPVPVDESGDTGTPLCPALPAELNYVDDSQPGIRRRRLRGKFA
YYTAQGERITDEAQVRRINSLAIPPAYRDVWICADPQGHLQATGRDARGRKQYRYHPRWR
EIRDSNKYERMLAFGETLPTLRKCLEQDLARSGMPREKVMALVVTLLESTLIRIGNPRYA
RDNRSYGLTTLRTRHVDIRGTAIRFQFRGKSGVEHQVTLRDRRLARLLRRCLELPGQQLF
QYLDDNGQRRTVGSGDINQYLRDLTGRDFTAKDYRTWAGSALALEHLRTRQWQTQSEARQ
QLVETVKQVASQLGNTPTVCRQCYIHPAILQAFTEGELADLKRARQRKWLSRQEVALLTF
LRSRADAQ
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaccctgccgagggtccgaagttgccgccgcaggcaaccggcatccgcccggtt
cccgtggacgaatcgggcgacacgggcacaccgctctgccctgcgctgccggcagagctg
aactacgtcgacgacagccagccgggcatccgacgcaggcgtttgcgcggcaagttcgcc
tattacaccgcgcagggcgaacgcatcaccgatgaggctcaagttcgccgcatcaacagc
ctcgccattccacccgcctatcgcgacgtctggatctgcgccgacccgcaaggtcacctg
caggccaccggacgggatgcgcgcggacgcaagcagtatcgttaccatccgcgctggcgc
gagatacgcgacagcaacaagtacgagcgcatgctggcattcggcgaaacgctgccaacg
ttacgcaaatgtctggaacaagacctggctcgcagcggtatgccacgcgagaaagtcatg
gcactggtggtgacgctgctcgaatccacgctgattcgcatcggcaatccgcgctacgcc
cgcgacaaccgctcctacggcctcaccacgctgcgcacccgccacgtcgacatacgcggc
acggcgatccgcttccagtttcgcggcaagagcggcgtcgaacaccaggtgacactgcgt
gatcgacggctggcgcgcctgctgcggcgctgcctggagttgccgggacaacagctgttc
cagtacctggacgataatggccagcgccgcacagtcggctccggtgacatcaaccagtac
ctgcgcgatctgaccgggcgtgatttcactgccaaggactaccgcacctgggccggcagc
gcgctggcgctggagcacctacgcacccggcaatggcagacccaaagcgaggcgcgccag
caactggtcgagacggtgaagcaggtcgccagccagctgggcaacacgccgacggtatgc
cgccagtgctatatccacccggcgattctgcaggcattcaccgaaggcgagctggcggac
ctcaagcgcgcacggcagcgcaagtggttgagccgtcaggaggtggccttgctgacgttt
ctgcgcagtcgtgccgacgcgcaatag
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