Pseudomonas phenolilytica: HU825_18325
Help
Entry
HU825_18325 CDS
T08532
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pphn
Pseudomonas phenolilytica
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pphn03009
]
HU825_18325 (rlmD)
Enzymes [BR:
pphn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HU825_18325 (rlmD)
Ribosome biogenesis [BR:
pphn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HU825_18325 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
MTS
Cons_hypoth95
Methyltransf_23
PCMT
Methyltransf_12
Methyltransf_15
TRM5-TYW2_MTfase
Methyltr_RsmB-F
UPF0020
RrnaAD
PrmA
MetW
Motif
Other DBs
NCBI-ProteinID:
UIP88392
LinkDB
All DBs
Position
complement(3851047..3852411)
Genome browser
AA seq
454 aa
AA seq
DB search
MAKRSGALRFQPSGGERKPQVPVGKKQTLLIERLAHDGRGIAFVDGRTWFVAGALPGERV
EARVLGARAQIVEARCERVLDASPQRRHEPCPHARLCGGCTLQHAAADDQLELKQRTLAE
QLARVAGLEPQAWAAPLSGPELGYRRRARLAVRWDAKAARLAVGFRAAASQQIVPIEQCP
VLVQPLQKMLPHLLAVLQKLTRPQAIGHIELFSGTAEAVLVRHTAALVTDDLAQLQAFAH
QQGAQLWLQGEGEPVPLEAAPLGYRLEPWNLELEWRPGDFVQVNAAVNEAMIAQALDWLV
PTPGERVLDLFCGLGNFALALARSGAQVTGVEGVEAMVERARGNALRNGLDGLHFYRADL
SKPLADAPWARSGFDAVLLDPPRDGALEVVRQMSEFGARRLVYVSCNPATLARDAAELAR
QGYRLSRAGVIDMFPQTAHVEAMALFEMSDRAAR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacgtagcggcgccttgcgctttcagcccagcggtggcgagcgcaagccgcag
gtgccggtcggcaagaagcagacgctgctcatcgagcggctggcccacgatgggcgcggt
atcgccttcgtcgacggccgtacctggttcgtagccggtgcgctgccgggcgagcgggtc
gaggcgcgcgtgctcggtgcgcgcgcgcagatcgtcgaggcgcgctgtgagcgggtactc
gacgccagcccgcagcggcgccacgaaccctgtccgcatgcacgcctgtgtggcggctgc
accctgcagcatgcggcggcggacgatcagctcgaactcaagcagcgcaccctcgccgag
cagctggcgcgcgtcgccggcctcgagccacaggcctgggccgcgccgctcagcggcccg
gagctcggctatcgacgccgcgcccgacttgccgtgcgctgggatgccaaggccgcgcga
ctggcagtgggctttcgcgccgcggccagccagcagatcgtcccgatcgaacaatgcccc
gtgctggtacagcccttgcaaaagatgttgccgcatttgttggcggtgttgcagaaattg
acccgaccccaggccatcggccatatcgaactgttcagcggtaccgccgaggccgtgttg
gtgcgccacacggcggcgctggtgacggacgatctggcgcagctgcaggcgttcgcgcac
cagcagggtgcgcagctgtggttgcagggcgagggcgagccggtaccactcgaagcggca
ccgctgggctatcgtctggaaccgtggaatctggagctggagtggcgaccgggcgatttc
gtccaggtcaacgccgcggtcaacgaggcgatgatcgcccaggccctggactggctggtg
ccgactcccggcgagcgggtgctggacctgttctgtgggctgggtaatttcgccctggcg
ctggcgcgcagcggcgcgcaggtgaccggcgtagaaggcgtcgaggcgatggtcgagcgg
gcacggggcaatgcgttgcgcaacggcctggacggcctgcacttttatcgtgcagacctg
tcgaagccgctggccgatgcaccctgggcgcgcagcggattcgacgcggtgctgctggac
cccccgcgtgacggcgcgctggaggttgttcgacaaatgtcggagttcggtgcgcgccgc
ctcgtctatgtttcatgcaatcctgcaacgctcgcccgcgacgcggccgagctggcccgc
cagggctaccggctgtcccgggccggtgtgatcgacatgttcccgcagacggcgcatgtc
gaggcgatggcgctgttcgaaatgtcggaccgcgctgcccggtga
DBGET
integrated database retrieval system
