Pantoea phytobeneficialis: CTZ24_00915
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Entry
CTZ24_00915 CDS
T09899
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTZ24_00915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppho03019
]
CTZ24_00915
03400 DNA repair and recombination proteins [BR:
ppho03400
]
CTZ24_00915
Enzymes [BR:
ppho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTZ24_00915
Messenger RNA biogenesis [BR:
ppho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTZ24_00915
DNA repair and recombination proteins [BR:
ppho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CTZ24_00915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QGR05039
UniProt:
A0AAP9KMS3
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All DBs
Position
207911..209734
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AA seq
607 aa
AA seq
DB search
MATSAVLNQETLAQQVLQDTFGYQQFRPGQQTIIETALAGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREEQQQVFADCRSGRLKLLY
IAPERLMMDNFLDSLHHWNPVMLAVDEAHCISQWGHDFRPEYGALGQLRQRFPELPVMAL
TATADETTRNDIAHLLQMHDPLIQISSFDRPNIRYTLVEKFKPTEQLLRYVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKTPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCDNCDICLDPPRRYDGLVEAQKAL
SSIYRTGQRFGMGYIVEVLRGASNQRIRDNGHDKLPVYGIGRDNSTEHWVSVLRQLIHLG
MVTQNIAMHSALQLTEAARPVLRAEIPLMLAVPRIVTVKTRSSSPKVYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGHRKLERFGKPFLVMI
KEHLDEE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacatcggcagtgctcaatcaggaaacgctggcgcagcaggtattacaggatacc
ttcggctaccagcaatttcgtcccggccagcaaaccatcatcgaaacggcgctggcaggg
cgcgattgcctggtggttatgcccaccggcgggggcaaatcgctgtgttatcaaattccg
gcgctggtgcgtgagggattaacgctggtggtttcgccgttgatttccctgatgaaagat
caggtcgatcaattgctggctaacggtgtggctgcggcctgccttaactccacccagacg
cgtgaagagcagcaacaggtgtttgccgattgtcgtagcggtcgcctgaaactgctctat
atcgcgcctgaacgcctgatgatggataacttcctcgacagcctgcaccactggaatccg
gtgatgctggcggtggatgaagcgcactgtatctcgcaatggggccacgatttccgcccg
gagtatggtgcgttgggccaactgcgccagcgcttcccggagctgccggtgatggcgctg
accgccaccgctgacgaaaccacgcgtaatgacatcgcgcatctgttgcagatgcacgat
cccctgattcaaatcagtagcttcgatcgaccgaacatccgctatacgctggtggagaag
ttcaaaccgaccgagcagttgctgcgctatgttcaggaccagcgcggcaaaagcggcatt
atttactgcaacagccgcgccaaggtggaagacaccgctgctcgcctgcaaagccgtggt
ctgagcgtgggtgcttatcatgccggtatcgacagcgcccagcgtgcgcgggtgcaggag
gctttccagcgtgatgacctgcaaattgtggtggctaccgtggcgttcggcatgggcatc
aacaagcccaacgtccgttttgtggtgcactttgatattccgcgtaacatcgaatcctat
tatcaggaaacgggccgcgccggacgtgacggtctgcctgccgaagccatgatgctgtac
gacccggccgatatggcctggttgcgtaaatgtctggaagagaaaacgcctgggccgttg
caggatattgaacgccataaactcaatgcgatgggcgcgtttgctgaagcgcaaacctgc
cgtcgtctggtgctgctcaactattttggcgagggacgtcagcagccgtgtgacaactgc
gatatctgcctcgatccaccgcgtcgttacgatggtctggtggaggcgcagaaagcgctg
tccagcatttatcgcaccgggcagcgcttcggcatgggctatattgttgaagttttgcgc
ggtgccagcaaccagcgtattcgcgataacgggcacgacaaattgccggtttacggcatt
ggccgggataacagcaccgaacattgggtcagcgtgctgcgtcagctcatccatctcgga
atggtgacgcaaaatatcgccatgcattccgcgttacaacttaccgaagcggctcgtccg
gtgctgcgtgcagaaatcccgctgatgctggcggtgccgcgaattgtgacggtgaaaacg
cgcagcagctcgccgaaggtctatggcggcaattacgatcgcaaactgttcgccaagctg
cgtaagttacgtaaagcgattgctgacgaggagaatattccgccctatgtggtgtttaac
gacgccacgttgattgagatggcggaacagatgccggtgagcgcgtcagaaatgctgagc
gtgaacggtgtcggccatcgcaaactggaacgttttggtaaaccgttcctggtgatgatc
aaagaacatcttgatgaagagtaa
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