Pantoea phytobeneficialis: CTZ24_03365
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Entry
CTZ24_03365 CDS
T09899
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ppho
Pantoea phytobeneficialis
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppho03021
]
CTZ24_03365
Transcription machinery [BR:
ppho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CTZ24_03365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QGR05492
UniProt:
A0AAP9H2V6
LinkDB
All DBs
Position
complement(753357..756263)
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AA seq
968 aa
AA seq
DB search
MVFTLGQRWISDTESELGLGTVVALDTRMVTLMFPATGENRLYARNDSPVTRVIFNPGDT
VTSHEGWQMRVDDVRNENELITYIGTRLDTEESNVLMREVMLDSKLVFSKPQDRLFAGQL
DRMDRFALRFRARKYQSEQYNLPTSGLRGMRTNLIPHQLHIAHDVGRRHAPRVLLADEVG
LGKTIEAGMIIQQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLRFALFDDDRYTEAQH
DSDNPFDTEQLIICSLDFVRRNKQRLELLADAAWDLLVVDEAHHLAWSEDAPSREYQVIE
QLAEQTPGVLLLTATPEQLGLESHFARLRLLDPNRFHDFSQFVAEQQHYRPVADAVSTLL
ADKAISKDEMNLINDLVGEQDIEPLLQVANSDREGKEDARKELISMLMDRHGTSRVLFRN
TRNGVKGFPKRELHQIRLPLPAQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSNRKEKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSI
IERDRAAAWFASEEDGAQVLLCSEIGSEGRNFQFASRLVMFDLPFNPDLLEQRIGRLDRI
GQMHDIQILVPWLEKTAQAVLLRWYHEGLDAFEHTCPTGRTIYDSVYSQLIEYLAAPENP
QGLDEFIVECRKQHDQLKAQLEQGRDRLLEQNSNGGEAAQALAEAIAEQDNDTGLVNFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPEDGCTVTFNRNQALSREDTQFITWE
HPLIRNGLDLILSGDTGSCALSLLKNKALPVGTLLVEMIYVVEAQAPKHLQLTRFLPPTP
VRLLMDRTGNNLAGKVEFESFNRQLNAVNRHTGSKLVNAVQQDVHQILTLAESAVVPEAQ
AIIAAAKAEADEKLSAELSRLEALRAVNPNIRDDEVEALESNRNQVLASLGDAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggtttttacactgggtcaacgctggattagtgatacggaaagtgaactgggactgggc
acggtagttgcgctggatacgcgcatggtcacactgatgttcccggcaaccggcgaaaac
cgcctctatgcccgtaatgattctcctgttacccgcgtgatcttcaatccgggtgatacc
gtcaccagccatgaaggctggcagatgcgcgtcgatgacgtccgtaacgaaaatgagtta
attacctacatcggcacacgtctcgacaccgaagaatccaacgtgctgatgcgcgaagtg
atgctcgacagcaaactggtgttcagcaaaccccaggatcgcctgttcgccggacagttg
gatcgcatggacaggtttgcgttgcgcttccgcgcccgtaaatatcagagcgagcagtac
aacctgccgaccagcggtttacgtggtatgcgcaccaacctgatcccacatcagctgcac
attgcgcacgatgttggccgtcgccatgcaccgcgagtgttgctggctgacgaagtgggt
ctgggtaaaaccatcgaagccgggatgatcatccagcaacagttgctggctggacgtgcg
gagcgcgtgctgattgtggtaccggaaaccctgcaacatcagtggctggtggagatgctg
cgccgcttcaatctgcgctttgcgctgtttgatgatgaccgctacaccgaagcgcagcac
gacagcgataacccatttgataccgagcagctgatcatctgctcgctcgattttgtccgc
cgtaataagcagcgtctggaactgctggccgatgctgcgtgggatctgctggtggttgat
gaagcacaccatctggcatggagtgaagacgcaccgagccgtgaatatcaggtcattgag
cagttggcggaacagacgcctggcgtactgctgctgaccgcgacaccggaacagctcggt
ttggagagccatttcgcccgtctgcgcctgctcgatcctaatcgcttccacgatttcagc
cagtttgtagctgaacagcagcactatcgcccggtagccgatgcggtaagcaccctgctg
gccgacaaagcgatctccaaagatgaaatgaacctgatcaacgatctggtcggtgagcag
gacatcgaaccgctgttgcaggtggcaaacagcgatcgcgaaggcaaagaagatgcacgc
aaagaactgatttctatgttgatggaccgtcacggcaccagccgcgtgctgttccgcaac
acccgtaacggcgtgaaaggtttcccgaaacgcgaactgcatcagatccgcctgccgctg
ccggcgcagtaccaaacggcaattaaagtctccggcattatgggcgcacgtaaaagcgcg
gaagaacgcgcccgtgacatgctgtacccggagcagatttatcaggagtttgaaggtgac
agcggcacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctcaccagc
aaccgtaaagagaaagtgctggtgatttgtgccaaagccgccaccgccctgcaactggaa
caggtgctgcgtgagcgcgaaggtatccgcgccgccgtgttccacgaaggtctgtcaatc
atcgaacgtgaccgcgctgcggcctggttcgcctccgaagaagatggcgcgcaggtgctg
ctgtgttcggaaatcggttctgaaggccgcaacttccagttcgccagccgcctggtgatg
tttgatttgccgttcaacccggacctgctggagcaacgaattggtcgtctcgatcgtatc
ggccagatgcacgatattcagatcctggtgccgtggctggaaaaaaccgcgcaggcggtg
ctgttgcgctggtatcacgagggtctggacgcgtttgagcacacctgtccaactggccgc
accatttacgacagcgtctacagccagttgattgaataccttgccgcgccggaaaatccg
caggggctggatgagttcatcgttgagtgccgcaagcagcatgaccagttgaaagcccaa
ctggaacagggccgcgaccgtctgctggagcagaactcaaatggcggtgaagcagcccag
gcgttggcagaagcgattgccgagcaggataacgacaccggcctggtgaatttcgccctc
aacctgtttgatatcgtgggtatcaaccaggaggatcgtagcgataacctgatcgtgctg
acgccgtccgatcatatgctggtgccggatttccccggtctgccggaggatggctgcacc
gtgacctttaaccgcaaccaggcactgtcacgcgaagatacccagttcattacctgggaa
cacccgctgatccgcaacggtctggacctgatcctctccggcgataccggcagctgtgcg
ctgtcgctgttgaaaaacaaagcgttaccggttggcacgctgctggtagagatgatctat
gtggtggaagcccaggcaccgaagcatctgcaactgacccgcttcctgccgccgacaccg
gtgcgtttgctgatggatcgcaccggcaacaatctggccggaaaagtggaatttgagagc
tttaaccgtcagttaaacgccgtgaatcgccataccggcagcaagctggtgaatgccgtt
caacaggatgtgcatcagattctgacgctggcggagagcgcagtggtgccggaagcgcaa
gcgattatcgcggcggcaaaagccgaagccgatgagaagctgagcgctgagctatcccgt
cttgaggcactgcgcgccgtcaaccccaacatccgtgatgacgaggttgaggcgctggaa
agcaaccgtaaccaggtgctggcaagcctcggtgacgcgggctggcgtctggatgcgctg
cgcctgatcgtggtgacgcatcaataa
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