Pantoea phytobeneficialis: CTZ24_03960
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Entry
CTZ24_03960 CDS
T09899
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03030
DNA replication
ppho03430
Mismatch repair
ppho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTZ24_03960
03430 Mismatch repair
CTZ24_03960
03440 Homologous recombination
CTZ24_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppho03032
]
CTZ24_03960
03400 DNA repair and recombination proteins [BR:
ppho03400
]
CTZ24_03960
Enzymes [BR:
ppho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CTZ24_03960
DNA replication proteins [BR:
ppho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CTZ24_03960
DNA repair and recombination proteins [BR:
ppho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CTZ24_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QGR05605
UniProt:
A0AAP9KN73
LinkDB
All DBs
Position
893978..897460
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRYIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDFTNLCGLVKFYGTAHGA
GVKPIIGADFNVASELMSDELTQLTVLAANNTGYQNLTLLISRAYQRGYGIAGPVIDRDW
LAEYQEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYLELTRTGRPDEES
YLHAAVELAIAEGVPVVATNEVCFLNEDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM
RSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVVKSREGL
EERLEFLFPDPAVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDIAAIPLDDKKSFDML
QRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFQDGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
SLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQIQLDGERETLGLY
LTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIAARTMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFGAAWRISPSD
RLLNDLRSLVGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccccgttatatacatctgcgcgttcacagcgactactcaatggttgatggc
ctggcgaagaccgggccgctggtaaaaaaggctgcctcattagggatgcctgctattggc
attactgatttcaccaacctgtgcgggctggtgaaattctatggcaccgcgcacggtgct
ggggtgaagccgattattggcgccgattttaacgttgccagcgagctgatgagcgatgag
ctgacacagctcaccgtgctggcggcgaacaacaccggttatcagaacctgacattactg
atttcacgcgcttaccaacggggttacggtattgccgggccggtcattgatcgtgactgg
ctggctgagtatcaggaaggcttgattctgctttccggtggccgtcgtggcgatgtgggg
cgcagcttattgcgcggcaacaatgcgctggtggcgcagtgcctggcgttttatcagcag
cacttccccgatcgttactatcttgaattgacgcgcacgggccgcccggatgaggagagc
tacctgcacgcggcggttgagctggcgattgccgaaggcgtgccggtggtggcaaccaat
gaagtgtgcttcctcaacgaagatgattttgacgcgcatgaaattcgcgtggcaattcat
gatggttacacgctggacgatcctaaacgtccgcgtaactacagccctcagcaatatatg
cgcagcgaagcggagatgtgcgagttgttctcggacatcccggaagcgctggaaaatagc
gtagaaattgctaagcgttgtaatgtcaccgtgcgcctgggtgagtacttcctgccgcag
ttcccgaccggtgatatgaccaccgaagattttctcgtggtgaaatcaagggaaggtttg
gaagaacgtctggaattcctgttccccgatccggcagtgcgtgccgagaaacgcccggaa
tatgatgaacgtctggagattgaacttaacgttattaaccagatgggcttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggataacggcgtaccggtaggaccg
ggacgtggttccggtgccggttcgctggtcgcttatgcgctgaagattaccgatcttgat
ccgctggagtttgacctgctgttcgaacgtttcctgaacccggaacgtgtgtcgatgcct
gacttcgacgtcgacttctgtatggaaaaacgtgaccaggtgatcgaccacgttgctgag
atgtatggccgcgatgcggtatcgcagatcattacctttggtacgatggcagcaaaagcg
gtgatccgcgacgtaggccgtgtgctgggacatccttacggctttgttgatcgtatatcc
aagctggtgccgcccgatccgggcatgacgctggaaaaagcctttgctgccgaaccgcag
ttgccggaaatctacgaggcagatgaagaggttaaagcgctgatcgacatggcgcgtaag
ctggaaggtgtcacgcgtaacgccggtaaacacgccggtggcgtggtgatcgcgccgacc
aaaattaccgattttgcaccgttatactgcgatgaaaacggcaaccacccggtcacgcaa
ttcgataaaaatgacgtggaatatgctggtctggtgaagttcgacttcctcggcttgcgc
acgctcaccattatcgactgggcgctgaagatgattaacccgcgccgtgagaagcagggc
ctggaaccgattgatatcgcagccattccgctcgacgataaaaagagtttcgacatgctg
caacgcgcggaaaccaccgccgtgttccaacttgaatcgcgcggcatgaaggatctgatc
aaacgtctgaagcctgactgcttcgaagatatgatcgcattggtggcgttgttccgtccg
ggcccgttgcagtccggcatggtagataactttatcgaccgtaagcatggccgcgaggcg
atctcttacccggatatcgagtggcagcatgagtcgctgcaaccggtgctggaaccaacc
tacggcatcatcctttaccaggaacaggtgatgcagatcgctcaggtgctgtcgggttat
actctgggcggcgcggatatgctgcgtcgtgcgatgggtaaaaagaaaccggaagagatg
gcgaagcagcgctctgtgttccaggatggagcggagaagatgggcgtcaacggcgagctg
gcgatgaagatcttcgacctggtggagaaattcgccggttatggcttcaacaaatcgcac
tccgctgcctatgcgctggtttcttatcaaacgttatggttgaaagcccactatccggca
gagtttatggcggcggtaatgaccgcggatatggataacaccgagaaagtggtggggctg
gtggatgagtgctggcgtatgggcctcaaggtgttgccgccagatatcaactccgggctt
tatccgttccatgtgaacgatgagggtgagatcgtttacggtatcggtgcgatcaaaggc
gtgggtgaaggcccgattgaagcgatcctcgaggcgcgtaaccgggatggttacttcaaa
gaactgtttgatctctgcgcccgtaccgacaccaaaaagatcaaccgtcgcgtgatggaa
aaactgatcatgtccggtgcgttcgatcgtctcggcccgcatcgtgctgcgctgatgagc
tccctcagcgatgcgctgaaagccgccgatcaacatgcgaaagccgaggccatcgggcag
gcggatatgtttggcgtgctggcagaagaaccggagcaggtagagaaatcgtacgccagc
gtgacaccgtggccggaacagattcagctggatggcgaacgtgaaacgctgggcctgtat
ctcaccggccatccgatcaatcagtatctgaaagaaattgaacgttacgttggcgggatg
cgtctcaaagacatgcatccaaccgatcgtggtaaagtgaccgtcgcggcggggctggtg
attgctgcccgtacgatggtcaccaagcgtggcaaccgaattggtatctgtactctggat
gaccgctctgggcgtctggaggtgatgttatttaccgatgcattggataaataccagcaa
ttgctggagaaggaccgaatcctgatcgttagcggacaggtcagctttgatgacttcagt
ggcggccttaaaatgaccgcccgcgaagtgatggacattgacgaagcgcgggaaaaatac
gcgcgtggtcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccgt
ctccgccagtctctggagcctcatcgctccgggactattccggtgcatctctattatcag
agagcagatgcgcgggcgaagctgcgctttggtgcagcgtggcgtatttcgcccagcgat
cgtttactcaacgatttgcggtcgttagttgggtcggagcaggtggaactggagtttgac
taa
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