Pantoea phytobeneficialis: CTZ24_07885
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Entry
CTZ24_07885 CDS
T09899
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTZ24_07885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppho03019
]
CTZ24_07885
03009 Ribosome biogenesis [BR:
ppho03009
]
CTZ24_07885
Enzymes [BR:
ppho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CTZ24_07885
Messenger RNA biogenesis [BR:
ppho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTZ24_07885
Ribosome biogenesis [BR:
ppho03009
]
Prokaryotic type
rRNA processing factors
CTZ24_07885
BRITE hierarchy
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QGR06330
LinkDB
All DBs
Position
complement(1691772..1694984)
Genome browser
AA seq
1070 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVPVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMALPSEEEQSERRRPEQPALAAFVMPDAPPA
PVEVAEESKPAVKAEPKKARTTDTVAAPAASTGFMARLLGGLKKLFVGDAPATTPEASEK
QESKANADENGQQRGDRRNNRRNNRRERTPRNAENAPVREAREPREPREARETTENRRNK
RQNEPREERSPAQSEEARQQREEQQQQRREQRAERQRRRQEEKRAQQQEQKAAEPVVQAE
IVDEAAQEEERVQVMPRRKQRQLSQKVRFGDESEATTENVIAPVETAPRAVANEEPEAVN
DDQDDVDNRDSANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLAAASASPEMASG
KVWVRYPVAQTNEELVTQDALNETPDYSREETAAAVALPASVEPAQEVVAEPVVEVVEPQ
AHTDVPVVNTDDTRPIESPVNEEPTVISAADEAVAEVTAAQAEPVVDVAAEVNEAVTAAI
EAPAQVAPEVTAPVEEVLSTPVAAEAQPAPVAEPDAPVAAHATVANNAETRWKHYASAPM
TKAPAPAWEPEPARHSDWVRPPFAFAGRGSAGGHSATQQATAPATKPESV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggacaacgtctgtacgatctggatatcgaaagccccggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcacccgtattgaacccagcctggaagctgcgtttgttgattac
ggtgctgagcgtcacggttttctccctctgaaagaaatttcccgcgaatatttccccgcc
agttacaacgcgcacggacgtcccaatattaaagatgttctgcgtgaaggtcaggaagtc
atcgttcaaattgataaagaggagcgtggtaataaaggagcagcactgaccacctttatt
tcactggccggtagctacctggtgctgatgccgaacaacccgcgtgcgggtggcatttcg
cgccgtattgaaggcgatgatcgcaccgaactgaaagaagccctgtcagcgctggaactg
ccggaaggcatgggcctgattgtgcgcaccgctggcgttggcaaatccgccgagtcgtta
cagtgggaccttagcttccgtctgaaacactgggaagcgatcaaaaaagccgctgaaagc
cgcccggcacctttcctgatccatcaggaaagtaatgtgatcgtgcgcgccttccgcgac
tatctgcgtcaggatatcggtgaaatcctcatcgataacccgaaagtcctcgaactggcg
cgtcagcatatcgctgcgctcggtcgtccggacttcagcagcaaaatcaagttgtacacc
ggtgaaatcccgctgttcagccactaccaaatcgaatcgcagattgaatctgctttccag
cgtgaagtgcgtctgccatctggcggctctatcgtcattgacagcactgaagcactgacg
gcgattgatatcaactcagcacgcgcgacgcgcggtggtgatatcgaagagacggcgttc
aataccaacctcgaagcggcagacgaaatcgctcgtcagctgcgtctgcgtgacctcggt
ggtctgattgttatcgacttcatcgatatgacgccggtacgccaccagcgtgccgtggaa
aaccgtctgcgtgaagcggtacgtcaggatcgtgcacgtattcaaatcagccatatttca
cgctttggtctgctggagatgtcacgtcagcgcctcagcccatcactgggcgagtccagt
catcacgtctgcccacgctgtagcggcaccggcaccatccgtgataacgaatcgctgtcg
ctgtctattctgcgtctgattgaagaagaagcgctgaaggacaacaccaaagaagtccac
gccattgtgccggttccggtcgcttcctacctgctgaacgaaaaacgtgatgcagtcagc
gccattgagaagcgtcagggtggcgtgcgcgccatcatcgtaccgaacgatcagatggaa
acgccgcactactccgtgttgcgcgtgcgcaaaggcgaagagacgcaaacgctgagctac
cacctgccgaaactgcatgaagcagaaatggcactgccttccgaagaagagcagtcagaa
cgtcgtcgtcctgagcaacctgccctcgccgcctttgtgatgccggatgcaccgcctgca
ccggttgaagtggcagaagagagcaagcctgcggtgaaagctgagccgaagaaggccagg
acaaccgacaccgtcgcagcaccggctgcgtcaaccggctttatggcacgtctgttgggt
ggattgaaaaaactgtttgttggtgatgcaccggcgactacgccggaagccagcgagaaa
caggaaagcaaagcaaacgctgatgaaaacggtcaacagcgtggcgatcgtcgcaacaac
cgccgcaataaccgtcgtgaacgcactccgcgtaacgctgaaaatgcgccggtacgtgaa
gcacgcgagccgcgtgagccacgcgaagcgcgtgaaaccaccgaaaaccgccgcaataaa
cgccagaacgagccgcgtgaagaacgcagcccggcacaaagcgaagaagcacgccagcaa
cgcgaagagcagcaacaacagcgtcgcgaacaacgtgcggaacgccagcgtcgtcgtcag
gaagagaaacgcgcccagcagcaggaacagaaagccgctgagccggtggtgcaggctgaa
atcgttgatgaggcagcgcaggaagaagaacgtgttcaggtcatgccgcgtcgtaaacaa
cgccaactgagccagaaagtgcgttttggtgatgaaagcgaagcgacaaccgagaacgtt
atcgctccggttgaaactgcgccgcgtgcagtcgctaatgaagaaccggaagcggtcaat
gatgatcaggatgacgttgataaccgtgacagcgccaatatgccgcgccgttcacgtcgt
tcaccgcgccacctgcgtgtcagcggtcagcgtcgtcgccgttaccgtgatgagcgctat
ccgacccaatctgcaatgcctctggctgcggcttcggcttcaccggaaatggcctctggc
aaagtctgggtacgttatccggttgcacaaaccaatgaagaactggtcacacaggatgca
ctgaacgagacgccggattacagccgcgaagagacggccgctgccgttgctctgcctgcc
agcgttgagccagcccaggaagtggttgctgagccagtcgtcgaagtagtggaaccgcag
gcacacaccgacgttccggtagtgaacaccgatgacacccgtccgattgaatctccggtc
aatgaagaaccgaccgtgatttcagcggcggatgaagcggttgccgaagtaaccgccgcg
caggccgaaccggtggttgatgttgctgctgaggtcaacgaagccgtaaccgctgccatc
gaagcacctgctcaggtggcaccggaagtgactgcgccagtggaagaggtcctgtccacg
ccggttgccgcagaagcgcagccagcgccagttgcggaacctgatgcgccagtcgccgct
cacgctaccgtggccaacaacgcagaaacccgctggaagcattatgcttcggcaccgatg
accaaagcaccggcaccggcatgggaacctgaaccggctcgccatagcgattgggtacgt
ccaccgtttgcctttgcgggccgtggatcggctggcggtcatagcgccacacagcaggcg
accgcaccggcaaccaagccagaaagcgtctaa
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