Pantoea phytobeneficialis: CTZ24_08040
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Entry
CTZ24_08040 CDS
T09899
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTZ24_08040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppho03400
]
CTZ24_08040
Enzymes [BR:
ppho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTZ24_08040
DNA repair and recombination proteins [BR:
ppho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTZ24_08040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGR06360
UniProt:
A0AAP9H417
LinkDB
All DBs
Position
complement(1723035..1726478)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSEQSRYTLPVKAGDHRQLGQLVGAAQAVECASITEHHQGPVLMITPDMQSALRLQEEIR
QFTDLPVSNLADWETLPYDSFSPHQDIISSRLSTLYQLPTLTQGMLIMPVNTLMQRVCPH
SFLHGHALVMRKGQQLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDSQRTLEAVDAINLLPAHEFPTDKAAIEQFRTRWRETFDVRRE
AEHVYQQVSKGTLPAGIEYWQPLFFEQALPTLFSYLPANTLIVNSGDLESSAQRFWQDVN
ARFENRRIDPMRPLLEPVALWLRPDALFSELKAWPRVQLSSETLADKAANTNLGYQPLPE
LTVQAQAKAPLDLLRQFLEQFNGPVVFSVESEGRRESLQELLARIKLRPQPISRLADASA
QPHSLMIGASERGFIDNARQLAFICESDLLGERVSRRRQDNRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGLTRLEAGGIEAEYLMLSYAGDAKLYVPVSSLHLISRYAGGADENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDRDQYQLFCEGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENSKQVAVLVPTTL
LAQQHYDNFRDRFANWPIRIEMLSRFRSAKEQNQILEQAAEGKVDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFTLYMELLESAVDALKAGREPSLEDLTSNQTDIELRMPALLPDDFIPDV
NTRLSLYKRIASASDDGELAELKVEMIDRFGSLPDAARNLLDIAALRLVARQLGVRRIEA
SEKGGFFEFAPQNHVDPGWLIGLLQKDPRQWKLDGPTRLKFTRDLAERKTRMEWVQNFVS
DLMKNRV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagagtcgttataccctgccagtcaaagccggtgaccaccgtcaactcggt
caactggtgggagccgcccaggcggttgagtgtgccagcatcaccgaacatcatcagggt
ccggtgctgatgattaccccggatatgcaatctgccctgcgactacaggaagagattcgc
cagttcaccgatctgccggtcagtaacctcgccgactgggaaacgctgccctacgacagc
ttctccccgcatcaggacattatctcctcccgtttgtccaccttgtatcaattgccgacc
ctgactcagggcatgctgatcatgccggtgaacacgctgatgcagcgcgtttgcccgcac
agctttttacacggccatgcgctggtgatgcgtaaagggcaacagctttcgcgcgatgcc
ctgcgcgaccaactggaacaagccggttatcgccatgtcgaccaggtgatggagcacggg
gaatatgccacgcgtggcgcgctgctcgacctgttcccgatggggagcgatcagccgtac
cgcattgacttctttgatgatgaaatcgatagcctgcgcctgtttgatgtcgacagccaa
cgcacgctggaagcggtcgacgccatcaatctactaccagcccatgaattcccgaccgat
aaagccgccattgaacagtttcgcacccgctggcgcgaaacctttgatgtgcgccgcgaa
gcggaacacgtttatcagcaggtgagcaaaggcaccctgcccgccgggattgaatactgg
cagccgctgtttttcgagcaggcgctgccgacgttattcagctacctacctgccaacact
ttgattgttaacagcggcgacctggaaagcagcgcgcagcgcttctggcaagacgtcaat
gcgcgttttgaaaaccgccgtatcgacccgatgcgcccactgctggagccggtggcgttg
tggctgcgtccggatgcgttattcagtgagctgaaagcctggccacgcgtccagttaagc
agcgaaacgctggctgacaaggccgccaataccaacctcggctatcaaccgctgccggaa
ctgacggtgcaggctcaggccaaagcgccactcgatctgctgcgtcagttcctggaacag
ttcaacggtccggtggtgttctcagtcgagagcgaaggccggcgtgaaagcttgcaggaa
ctgctggcgcgcatcaaattgcgtccacagcccatcagccgcctggcggacgccagcgca
caaccgcacagcctgatgattggtgccagcgaacgcggttttatcgataacgcacgccag
ctggcgtttatctgtgaaagcgacctgctgggcgagcgtgtcagccgccgccgtcaggac
aaccgccgcaccattaacccggatgtgctgatccgcaacctcgccgagttgcatcccggt
cagccggtggtgcatctggaacacggcgtgggacgttatattggcctgacccgactggaa
gccggggggattgaagccgaatatctgatgctctcctacgctggcgacgccaaactgtat
gtgccggtctcgtcgttgcatctgatcagccgttacgccgggggcgctgacgaaaacgcg
ccgctgcacaagctgggaagcgatgcctggtcccgcgcccgtcagaaagcggcagaaaaa
gtgcgcgacgtggcagcagaactgctggatatctatgcccagcgcgccgccaaagccggt
tttgcctttaagcacgaccgcgatcaataccaattgttctgtgaaggcttcccgtttgaa
accacgccggatcaggcccaggcgatcaacgccgtactgagcgatatgtgtcagccgctg
gccatggatcgtctggtgtgcggtgacgtgggcttcggtaaaaccgaggttgcgatgcgc
gccgccttcctggcggtggagaacagcaaacaggtggcggtactggtgcccaccaccctg
ctggctcagcagcactacgataatttccgcgatcgttttgccaactggcccatccgcatt
gagatgctgtcacgcttccgcagtgccaaagagcaaaaccagatactggagcaggcggca
gagggcaaagttgatatcctgatcggcacgcacaagctactgatgagtgacctgaagtgg
cacgatctcgggctgttaattgtcgatgaagaacaccgctttggtgtgcgtcacaaggag
cgcatcaaggcgatgcgcgccgatgtcgatattctgacgctgaccgcgaccccgatcccg
cgtaccctgaatatggcgatgagcggcatgcgcgatctgtcgattatcgctacgccaccg
gcacgccgtctggcggtgaaaacctttgtgcgcgagtacgatagcctggtggtgcgtgaa
gcaattctgcgtgaagtgctgcgcggcggccaggtttactatctgtacaacgatgtggaa
aacatcgaaaaggcggcccaacggctggcggaactggtgccggaagcccgcatcgccatt
ggtcacggccagatgcgtgagcgcgatctggaacgggtgatgaacgatttccaccaccag
cgcttcaacgtgctggtgtgtaccaccatcatcgaaactggtatcgacgtgccaagcgcc
aataccatcatcatcgaacgcgccgaccattttggcctggcgcagttgcatcagttgcgt
ggtcgtgtcggccgttcgcaccaccaggcgtatgcctggttgctgaccccacatccgaaa
gccatgaccaccgacgcacaaaagcgactggaagctatcgcctcactggaggatttgggt
gccggttttgcgctggcgacccacgatctggagattcgcggggccggtgaattgctgggt
gaagatcagagcggccagatggaaaccatcgggtttaccttgtatatggagctgctggaa
agcgcggtcgatgcgctgaaggccggacgtgaaccctcgctggaagacctcaccagtaac
cagacggacattgagctgcgtatgccagcgctgctgccggatgattttatccctgatgtg
aacacccgtctgtcattgtacaaacgcatcgccagcgccagcgatgacggcgaactggct
gagcttaaggtggagatgattgaccgctttggctccctgcctgatgcagcacgtaatctg
ctggatattgcagcgttgcgtttagttgcgcgtcagctgggtgtgcgccgcatcgaggcc
agtgaaaaaggcggtttctttgagttcgcgccgcagaatcacgtcgatcctggctggttg
attggtctgctgcaaaaagacccgcgccagtggaagctggatggtccgacacgcctgaaa
ttcacccgcgatttagccgagcgcaaaacgcgcatggagtgggtgcagaatttcgtcagt
gacctgatgaaaaatcgagtgtaa
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