Pantoea phytobeneficialis: CTZ24_10570
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Entry
CTZ24_10570 CDS
T09899
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppho
Pantoea phytobeneficialis
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppho03019
]
CTZ24_10570
Enzymes [BR:
ppho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTZ24_10570
Messenger RNA biogenesis [BR:
ppho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CTZ24_10570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
PhoH
T2SSE
nSTAND3
AAA_23
ResIII
NACHT
AAA_30
SLFN-g3_helicase
AAA_25
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
QGR06833
UniProt:
A0AAP9H5A4
LinkDB
All DBs
Position
complement(2260345..2264241)
Genome browser
AA seq
1298 aa
AA seq
DB search
MSSSVTSPLAPLWTRLDNLMLRDRQRLQRRLQGATKVKNPEAQQGIATDLAAEFTLAEQR
VAQRMAATPRITFPENLPVSQKQQAIAEAIRDHQVVIVAGETGSGKTTQLPKICLALGRG
VKGLIGHTQPRRLAARTVANRIADELETSLGGCIGYKVRFNDQVSDTTQVKLMTDGILLA
EIQQDRLLLQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FHNAPVIEVSGRTFPVEVRYRPVVEEAEDTDRDQLQAIFDAVDELGQESRGDILIFMSGE
REIRDTADALMKRDLPHTEILPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITVNED
GHYKLTASGRQLALLPVDPRLARMVLEAQKFGCVREAMIITAALSIQDPRERPVEKQQAS
DEKHRRFADKESDFLAFVNLWNYLQEQQKALSGNQFRRQCKSDYLNYLRVREWQDIYTQL
RQVVREQGMPVNSEPAPYREVHCALLTGLLSHIGQKDAEKQEFTGARNARFSIFPGSGLF
KKPPKWTVVAELVETSRLWGRIAARIDPEWIEPLAQHLLKRSYSEPHWEKAQGAVMASEK
VTLYGLPIVQARKVNYGQIDPQLSRELFIRHALVEGDWQNRHAFFRSNQKLRSEVEDLEH
KSRRRDILVDDETLFAFYDRRIGSEVVSARHFDSWWKKASKENADLLSFDKQMLIKDGAE
KVSQLDYPNFWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQVEEGGFEWQIPGVRRE
LVIALIKSLPKPVRRNLVPAPNYAEAFLGRVTALELPLLDALEREFRRMTGVTIDREAWQ
WDQVPDHLKMTFRVVDEHNRKLQEGKDLHQLKQALKGKVQETLSKVADDGLEQSGLHIWS
FGDLPQSYEQKRGSYQVKAWPALVDEKDSVAIRLFDSEQEQQKMMWRGQRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLMGEAGGPAWQQENFEQLRDKV
RAELNETVVTIAKQVEQILTCVFNINKRLKGRVDMSLALALADIKNQMNGLVYRGFVTSN
GWQRLADTLRYLQGIERRLEKLPVDPHSDRARMLKVQAVEQAWQSWRNKLPPQRQDDAEV
LAIRWMLEELRISYFAQQLGTPYPISDKRIVQTMEQMG
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatccgttacttctcctttagcgccgctctggacgcgacttgataacctgatg
ttacgcgatcgccaacggttacaacggcgactccagggcgcgacaaaagtaaaaaatcct
gaagcacaacaggggattgcgaccgatctggccgccgagttcaccctcgcggagcagcgc
gtggcgcaacgtatggcggctacgccgcgcattacctttccggaaaatctaccggtcagc
cagaagcagcaggcgatcgctgaagcgattcgcgaccatcaggtggtgatcgttgccggt
gaaacgggttcggggaaaaccacgcagttaccgaagatttgtctggcgctgggccgtggg
gttaaagggttgattggtcatacgcaaccccgccgtctggcggcgcgcaccgtagcgaac
cgcatcgcggatgaactggagacgtcactcggtggctgcatcggctacaaggtgcgtttt
aatgatcaggtcagcgacaccacccaggtgaagctgatgactgacggtattttgctggca
gaaatccagcaggaccgcctgttgttgcaatatgacaccatcatcatcgatgaagcgcat
gaacgtagcctgaacatcgattttctgctcggttatctgcgcgaattgctgccacgccgt
cccgatttgaaggtgatcatcacctcggcgaccatcgatcctcagcgcttttcacgccat
tttcacaatgcgccggtgattgaagtctccgggcgcactttcccggtggaggtgcgttat
cgtcctgtggttgaagaagccgaggataccgatcgtgaccagcttcaggcgattttcgat
gcggtggatgaactgggacaggaaagtcggggtgatatcctgatctttatgagtggtgaa
cgcgaaattcgcgataccgccgatgcgctgatgaaacgcgatttgccgcataccgagatt
ctgccgctgtacgcgcgattgtcgaatgccgaacagaaccgggtgttccagtcgcacagt
ggacgccgcatcgtgctggcgaccaacgtggcggaaacctcactgaccgtgccgggtatt
aagtacgttatcgaccccggcacggcacgtatcagccgctacagctaccgcaccaaagtg
cagcgcctgccgattgagccggtttcccaggcatcggctaatcagcgtaaaggccgctgt
ggtcgcgtctcggaaggtatctgtattcgtctctactcagaagacgatttcctcagccgt
cctgagtttaccgacccggagattctgcgtaccaacctcgcgtcggttattttgcagatg
actgcgctcgggctgggcgatatcgctgccttcccgtttgtcgaagcaccggataagcgc
aatatccaggacggggtgcgtctgctggaggagctgggggcgatcaccgtcaatgaggat
ggtcactacaaactgacggcatcaggacggcaactggcgttgctgccggtcgatccgcgt
ctggcgcgcatggtgctggaagcgcagaaatttggctgcgtacgtgaagcgatgatcatc
accgctgcgttgtcgattcaggatccgcgagagcgtccggtggagaaacagcaggcatca
gacgaaaaacatcggcgatttgctgacaaagagtcagattttctcgctttcgttaatttg
tggaactatctccaggaacaacaaaaggcgctgtcgggcaatcagttccgtcgccagtgt
aaaagcgactatctcaactatctgcgtgtgcgtgaatggcaggatatctatacccagttg
cgtcaggtggtgcgtgaacaaggtatgccggtcaacagcgaacctgcgccttatcgagaa
gtacactgcgcgttgcttacgggcttgctatcacatatcgggcagaaagacgcagaaaaa
caagagtttaccggcgcacgcaacgcccgcttctccatcttccccggttccgggctgttt
aagaagccgcccaagtggaccgtggtggcggagctggtggaaaccagccgtctgtgggga
cgcattgcggcacgcatcgatcctgaatggatcgaaccactggcgcagcatttgctgaag
cgcagctacagcgaaccgcactgggaaaaagcccagggtgcggtaatggccagtgaaaaa
gtgacgctgtacggtttgccgattgtacaggcgcgcaaggtcaactacggccagattgat
ccgcagctaagccgtgaattgtttatccgtcacgcgctggtggagggggactggcagaac
cgtcacgccttcttccgcagcaaccaaaaactgcgtagcgaagtggaagacctggaacat
aaatcacgccgccgtgacatcctggttgatgatgaaaccttgtttgctttctacgaccga
cgtatcggcagcgaggtggtttccgcgcgccattttgacagttggtggaaaaaggccagc
aaagaaaacgcggatttgctcagttttgataagcagatgctgatcaaagatggcgcggaa
aaggtcagccaactcgattacccgaatttctggcatcagggcaacctgaagctgaaactc
agttaccagtttgaaccgggcgcagatgctgacggggtgacggtgcatattccgctgccg
ctactcaatcaggtggaggaaggtggctttgagtggcagatcccgggcgtacgccgcgag
ctggtgattgcgttgattaagtcattaccgaaaccggttcgacgtaatctggtgcccgcc
ccgaactatgctgaggccttccttggacgcgttacggcgctggagctgccgttgctggat
gcgctggagcgtgagttccgccgcatgaccggtgtcaccattgaccgcgaagcctggcag
tgggatcaggtgcccgatcacctgaaaatgacgttccgcgtggttgacgaacacaaccgt
aagttgcaggaaggcaaggacctgcatcagttgaagcaggcgctgaaaggcaaagtacag
gaaaccctgtcgaaagtggcggatgatgggctggagcagagcggcctgcatatctggagc
tttggtgatttgccacaaagctatgaacagaagcggggcagttatcaggtcaaagcctgg
cctgcgctggtggatgaaaaagacagcgttgccatccgcctgttcgacagcgaacaggaa
caacaaaagatgatgtggcgcggtcagcggcgtttgctgctgctcaatatcccgtcaccg
atcaaatatctgcatgagaagctgccgaacaaagccaagctcggtctgtactttaacccg
tacggcaaagtgctggatttgattgatgactgcatcgcctgtggcgtggataagctgatg
ggtgaagccggtggtccggcgtggcagcaggagaatttcgagcagctacgtgacaaagtg
cgtgccgaactgaatgaaacggtggtcaccatcgcgaagcaggtggagcagattctgacc
tgcgtattcaatatcaacaaacgcctgaagggccgggtggatatgtcgctggcgctggcg
ttggctgatatcaaaaatcagatgaatggcctggtataccgtggtttcgtcaccagcaat
ggctggcagcggctggcggataccttacgctatttgcagggcatcgaacgccgtctggag
aagctgccggtggacccgcacagcgatcgggcgcggatgttgaaagtgcaggcggtggag
caggcgtggcagagctggcgtaacaagctgccgccgcaacgtcaggacgatgcagaggtg
ctggcgattcgctggatgctggaagaattacgtatcagctactttgctcagcaactgggc
accccttatccgatttcggataagcgtattgtgcagactatggagcagatgggatga
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integrated database retrieval system
