Pantoea phytobeneficialis: CTZ24_11275
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Entry
CTZ24_11275 CDS
T09899
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppho
Pantoea phytobeneficialis
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppho03016
]
CTZ24_11275
Enzymes [BR:
ppho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CTZ24_11275
Transfer RNA biogenesis [BR:
ppho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CTZ24_11275
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF4019
Motif
Other DBs
NCBI-ProteinID:
QGR08729
UniProt:
A0AAP9KR54
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All DBs
Position
complement(2410578..2411699)
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AA seq
373 aa
AA seq
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MNYSLIDQNDQLAAVCDKARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLNI
SDWSPFIALLRDTQVTKFLHAGGEDLEVFLHRFRCLPDPMVDTQILAAFAGQPLSWGFAA
MVMHFNQIELDKSEARTDWLARPLTARQCEYAAADVAYLLPIAHQLVAQTEAAGNMAAAL
SECDTLCQRRLDVLVPEDAWRDITNAWQLRPRQLAALQRLAAWRLNIARQKDMAVNFVVR
EENLWKVARFMPGSLGELDHLGLNGHEIRFHGKALVAMVAEAQAQDESTLPQPLGNLIDH
PEYKQTFKAIKALVQQVSEETGFSQELLASRRQINQVLSVHWGLKNASRTPELIAGWRGD
LFKARIDEILQTH
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaattattccctgatcgaccaaaatgaccaactggcggcggtatgtgacaaagcacgg
cagcatagcgctgtggcgctggataccgaatttgttcgcacccgtacttactatccgcag
ttgggcctgatccagctgtttgatggcgagcaattggtcctgatcgatcctctcaacatt
agcgactggtcaccgtttattgcgttattgcgtgatacccaggtaaccaaattcctgcac
gcgggtggtgaagatctcgaagtgtttctgcatcgttttcgctgcctgccggatccgatg
gtcgatacccaaattctggcggcttttgccgggcagcctctgtcgtggggttttgccgcg
atggtgatgcactttaatcagatcgagctggataaaagtgaagcgcgcactgactggctg
gcgcgtccgctgacggcgcgccagtgtgaatatgcggcggcggatgtcgcttacctgctg
ccgatagcccatcaactggtggcgcaaacggaagcggcaggcaacatggccgcagcgctg
agcgaatgtgacaccttatgccagcgtcgtctggatgtgctggtgcctgaagatgcctgg
cgtgatatcaccaatgcctggcaactgcgcccgcgtcagttggcggctttgcagcgtctt
gcggcgtggcggctgaatatcgcgcggcagaaagatatggcggtgaacttcgtggtgcgc
gaagagaacttgtggaaagtggcgcgttttatgcccggcagtctcggtgaactggatcat
ctgggcctgaatggccatgaaatccgcttccacggtaaagcgctggtggcgatggtggcc
gaagcgcaagcgcaggatgaaagcacgttgccgcaaccgctggggaatctgattgatcac
ccggaatacaagcagaccttcaaagccatcaaagcgttggtccagcaggtgagcgaagag
acgggttttagccaggagttgctggcttcacgtcgtcagatcaatcaggtgttgagcgtg
cattgggggttgaaaaatgcctcacgcacaccggaattaatcgcaggctggcgtggcgat
ttgttcaaggcgcgcatcgacgagattttgcagacgcactaa
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