Pantoea phytobeneficialis: CTZ24_11545
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Entry
CTZ24_11545 CDS
T09899
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTZ24_11545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppho03021
]
CTZ24_11545
Transcription machinery [BR:
ppho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTZ24_11545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
HAP1_N
PAC1
Motif
Other DBs
NCBI-ProteinID:
QGR07015
UniProt:
A0AAP9KPJ2
LinkDB
All DBs
Position
complement(2463795..2465639)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSADTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELSEEDRDDDDEDDEESDDDSSDDDNSIDPELAREKFVELRTQYETTRTVIKAKG
RSHADAVAEIQNLSEVFKQFRLVPKQFDYLVNNMREMMERVRTQERIIMKLCVELCKMPK
KNFITLFTGNETSESWFKAALAMNKPWSEKLLEVQDDVMRCLQKLLQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctacttgtcacccgtggtaaggagcagggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgatatgggtattcaggtggtggaagaagcccct
gatgccgatgatctgatgctgaatgaaaacagtgccgataccgacgaagatgccgcggaa
gccgccgctcaggtgttatccagcgttgaatctgaaattggccgtaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtactgttgaactgctgacgcgtgaaggcgaaatcgac
atcgctaaacgcatcgaagacggcatcaaccaggttcagtgctccgttgcagaatatccg
gaagcgatcacctatctgctcgatcagtacgatcgtgttgaagcgggcgaatcacgtctg
tccgacctgatcaccggctttgtcgatccgaatgcagaagaagatctggcaccaactgcg
actcatgtcggttctgagctgtctgaagaagaccgcgacgacgacgatgaagacgacgaa
gagagcgatgacgacagttctgacgacgataactctatcgatccagaactggcgcgcgaa
aaattcgttgagctgcgtacacagtatgaaacgacccgcacggtgatcaaagccaagggc
cgcagccatgccgacgcagttgccgaaattcagaatctttctgaagtgttcaaacagttc
cgcctggtaccgaagcagttcgattacctggtgaacaacatgcgtgaaatgatggagcgt
gtgcgtactcaggaacgcatcatcatgaagctgtgtgttgaactgtgcaaaatgccgaag
aaaaactttatcacgctgttcaccggcaacgaaaccagtgaaagctggttcaaagccgcg
ctggcaatgaacaagccgtggtctgaaaaactgctggaagtgcaggatgacgttatgcgt
tgcctgcaaaaactgctgcaaattgaagaagaaaccggcctgaccattgagcaggtcaaa
gacatcaaccgtcgtatgtctatcggcgaagccaaagcgcgtcgtgcgaagaaagagatg
gtggaagctaacctgcgtctggtgatttcaatcgccaagaaatacaccaaccgtggtttg
cagttcctcgacctgattcaggaaggtaacatcggcctgatgaaagcggttgataagttt
gaataccgtcgtggttataagttctcaacttacgccacctggtggatccgtcaggccatc
acccgttctatcgccgaccaggcacgtaccatccgtattccggtgcatatgattgagacc
atcaacaaactcaaccgtatttcgcgccagatgttgcaggagatgggccgcgaaccgacg
ccggaagaactggctgagcgtatgctgatgccggaagataaaattcgcaaagtgctgaaa
atcgctaaagagccgatctctatggagacgccgattggtgatgatgaagattcgcatctg
ggcgattttatcgaagacaccacgctggagctgccgctggactctgctacttctgagagc
ctgcgttccgcaacccacgacgtgctggcgggtctgactgcgcgtgaagcgaaagtgctg
cgtatgcgttttggtatcgatatgaataccgaccacacgctggaagaggtaggcaaacag
ttcgacgtaacgcgtgagcgtattcgtcagattgaagccaaggcgctgcgtaaactgcgt
cacccgagccgttccgaagtactgcgtagcttccttgacgactga
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