Pantoea phytobeneficialis: CTZ24_12610
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Entry
CTZ24_12610 CDS
T09899
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03410
Base excision repair
ppho03430
Mismatch repair
ppho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CTZ24_12610
03430 Mismatch repair
CTZ24_12610
03440 Homologous recombination
CTZ24_12610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppho03400
]
CTZ24_12610
DNA repair and recombination proteins [BR:
ppho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CTZ24_12610
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CTZ24_12610
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTZ24_12610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
QGR07215
UniProt:
A0AAP9H5Q5
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All DBs
Position
2699778..2701508
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AA seq
576 aa
AA seq
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MIHSVELRRREPHADDTLPADLPPLLRRLYLQRGVRDAAELERGAKHLLPWQTLGGIDAA
VTLLHQMLRDGRRIVVVGDFDADGATSTALTVLALRSLGGNIDYLVPNRFEDGYGLSPEV
VEQARARGAEMILTVDNGISSHAGVDTAHQHGIPVLVTDHHLPGETLPAAEAIVNPNLND
SDFPSRALAGVGVAFYLMLALRAYLRTQNWFSEGRAEPNLAEWLDLVALGTVADVVPLDA
NNRILVWQGLSRIRAGKCRAGIRALLEIANRDARQLVASDLGFAIGPRLNAAGRLDDMSV
GVALLLTEDISEARMLANELDALNQTRKEIEQGMKSEALALCDALERQHTDLPLGLAFYH
PEWHQGVVGILASRLKERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLHPGL
MIKFGGHAMAAGLSLQEARYEEFRQRFAALIDEWLDGEALQGVIWSDGELRAQEFSLQTA
ELLREAGPWGQAFPEPVFDGRFKLLQQRLVGERHLKVMVEPIGGGPLLDGIAFNVDTTLW
PDSSVRQVELAYKLDINEYRGNRSVQLIIDHLWPLA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgatccattctgttgaactgcgtcggcgtgaaccccatgccgacgataccttgcctgcc
gatttgccgccgctgctgcggcggctctacctgcaacgtggcgtgcgtgatgccgctgaa
ctcgaacgcggtgctaaacatctgctgccgtggcaaacgcttggtggcatcgatgctgcg
gtgacgctgctgcatcagatgctgcgcgacggtcgccgcattgtggtggtgggcgatttt
gacgccgatggtgccaccagcaccgcgttaacggtgctggcgctgcgcagtctcggtggc
aacatcgactaccttgtccccaaccgttttgaagatggctacggcctcagcccggaagtg
gtggagcaggcgcgggcgcgcggtgccgagatgatcctcacggtagataacggcatttcg
tcgcatgcgggcgtcgatacggcgcatcagcatggcatcccggtgctggtcaccgatcac
cacctgccgggtgaaacgctgcctgctgccgaagccattgttaatccaaatctgaacgac
agcgatttcccctcacgggcgctggcgggcgtgggcgtcgccttctatctgatgctggcg
ttgcgcgcgtacctgcgtacgcaaaactggtttagcgagggccgggcggaacccaatctg
gcggaatggcttgatctggtagcgctgggcaccgtggctgacgtggtaccgttggatgcc
aacaaccgcattctggtgtggcaaggcttaagccgcatccgcgccgggaaatgccgcgcc
ggtattcgtgcgttgctggaaatcgccaatcgcgatgcgcgacaactggtggcgagcgat
ctcggtttcgccatcggtccccgtctcaatgcggcggggcgtctggatgatatgtcggtg
ggcgttgccttgttgctgaccgaagacatcagcgaagcgcgcatgctggccaacgagctg
gacgcgttgaatcagacgcgtaaagagattgagcagggcatgaaaagcgaagcgctggcg
ttgtgtgatgcgctggagcgacaacacaccgacttgccgctcggtctggcgttctaccat
cccgagtggcatcagggagtggtagggattttggcttcgcgcctcaaggagcgtttccac
cgtccggtgatcgctttcgctccggcaggggacggcacgctgaagggctctggccgctcg
attgccgggctccatctgcgtgacgcgctggaacgtctcgataccctgcatcctggcctg
atgatcaaattcggcggtcatgcgatggccgcgggattatcgctgcaagaagctcgctac
gaagagtttcgtcagcgctttgccgcgttgattgacgaatggctggatggcgaagcgttg
cagggggtaatctggtcagatggtgaattgcgcgcgcaggagttttcgctgcaaaccgct
gagctactgcgggaagcgggaccctggggccaggcattccctgaaccggtatttgatggc
cggtttaaactgctgcaacaacggctggtgggtgaacgtcatctgaaagtgatggtggag
ccgattggcggaggtccgttgctggatggcatcgcctttaacgttgatacgactttgtgg
ccggacagcagcgtgcgccaggtcgaactggcctacaaactggacattaacgagtatcgt
ggcaaccgttcggtgcagctgattatcgaccatctgtggccgctggcataa
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