Pantoea phytobeneficialis: CTZ24_12855
Help
Entry
CTZ24_12855 CDS
T09899
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CTZ24_12855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppho03400
]
CTZ24_12855
Enzymes [BR:
ppho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CTZ24_12855
DNA repair and recombination proteins [BR:
ppho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CTZ24_12855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
S10_plectin
Motif
Other DBs
NCBI-ProteinID:
QGR07260
UniProt:
A0AAP9H5T4
LinkDB
All DBs
Position
2762617..2766156
Genome browser
AA seq
1179 aa
AA seq
DB search
MSLQPESLNPLTLPLRGERLIEASAGTGKTFTIGLLYLRLLLGLGGERAYTRPLSVEEIL
VVTFTEAATAELRGRIRANIHELRLACIRGHSNNPMLAQLLTEMPQPADAASLLLAAERQ
MDEAAIFTIHGFCQRMLNLNAFESGMLFEQQLIEDEQQLLKQASADFWRRHCYPLTLDVA
RAIVAEWSGPEQLLATLRPWLQGETPTLQSPPAADETLATRHAQNLARIADIKARWAAVG
EDIVSLISDSGVDKRSYSSKNLPVWVNKVSLWVHSETLDYQVPPELARFGQQVLDEKTKK
GEAPRHALFVAIDQFLAQPISLRDLVIARALSEVREAVRKEKRLRALLGFDDLLSRLDEA
LQQPGGAQLAQAIRQRFPVALIDEFQDTDPLQYRIFSTLYVNQPEHALLLIGDPKQAIYA
FRGADIFTYIRARNDVSAHYTLDTNWRSSPSMVTSVNQLFSRLKAPFLFADIPFLPVNFA
VPNQTLTLSLDQQPQAALRFWLQPGEGSSVGDYQQLMAQQCAADISRWLQAGQQQRALLG
KAPALRPVQASDITVLVRSRNEANLIREALNQLAIPSVYLSNRDSVYTTPEARELLWLLQ
AVLAPEQERMLRTALATSLFAFDAAQLDALDQDARGWDQLVDTFARWQLVWQQRGVLPML
REMMLERQLAENLLASENGERRLTDLLHLGELLQEAASQLDSPHALVRHLAQQIARPDSQ
AASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGYREADSALYHDRENFGAVLDLQ
NDEASLELAEQERLAEDLRLLYVALTRSVYHCSVGVAPLFRGTRKKEGASDLHKSALGYL
LQRGEAATAEQLAALLAEMNADGTEVVLAGESDATRWQAQTVSEETLSAREVTRVLAEPW
RVTSYSGLQQHGSSRLLEVMPGFDVEASGDESGEPQPSALTPHHFPRGAAPGTFLHELFE
SLDFTQPPTEAVLEQHLQQNGYPLHWQPMLSAWIARVVSTPLDEQGIQLAGVQTKDRLVE
MAFYLPIEGMLLAEKMDKLVKSHDELSRQAPALDFRQVQGMLKGFIDLVFRWQGKYYLLD
YKSNWLGDSHDAYTPQAMAQAMIDHRYDLQYQLYSLALHRYLEHRLVDYDYEQHFGGVFY
LFLRGMDGSSPANGVFHTRPSHAFITQLDNLFRGEGATS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgcagccagaatcgctcaatccgttaacgctgccgttgcgtggcgagcggtta
attgaggcatccgcaggaacggggaaaaccttcactatcggtctgctttacctgcggttg
ttgttagggttgggaggcgaacgagcctatacccgcccactctcggtggaagagattctg
gtggtgactttcacggaagccgcgaccgcagaattgcgtgggcgcattcgcgcaaatatc
cacgaactgcggctggcttgtattcgtggtcacagcaacaacccgatgttggctcaactg
ctgacggagatgccgcaaccagcggatgcagcgtccctgctgctggcagcggaacggcag
atggacgaagcggcaatctttactatccacggcttctgtcagcgtatgctcaaccttaat
gcctttgaatccggcatgttgtttgagcagcagttgattgaagatgaacaacagctgctg
aagcaggcctctgccgatttctggcgacgtcactgttatccgctgacgctggacgtggcg
cgagccatcgtggcggagtggagtggcccggagcagttgctggcaaccctgcgtccctgg
ttacagggagaaacgcctaccctgcaatctcccccggcggctgatgaaactttggctacg
cgacatgcgcagaatctggcacgtattgcagatattaaagcgcgctgggctgcggtgggc
gaagacattgttagcctgattagcgattccggggtcgataagcgcagctacagcagtaaa
aatctgccggtatgggttaacaaagtgtcgctctgggtgcacagcgagacgctggactat
caggtgcccccggaactggcccgttttggtcagcaggtgctggacgagaaaaccaaaaaa
ggggaggccccgcgtcacgcattgtttgtcgcgattgaccagttcctggcgcagccgatt
tctctgcgtgatttggtgattgcccgggcgctgagcgaagttcgtgaggcggtgcgtaaa
gagaaacgtctgcgtgcgctgcttggctttgatgacctgttgagtcgtctggatgaagcg
ctgcaacaacccggcggggcacagttggcacaggccatccgccagcgtttcccggtggcg
ctgattgatgaatttcaggataccgatccgctgcaataccgtattttcagcacgctgtat
gttaatcaaccagagcatgctttgctgttgatcggcgatcccaagcaggcaatttatgcc
ttccgtggggctgatatttttacctatatccgcgcccgtaatgatgtgagcgctcactat
acgctcgataccaactggcgctcctcaccatcaatggtgacaagcgtcaaccagctattc
tccaggctcaaagccccgtttctgtttgccgatattccttttctgccagtgaactttgcc
gtaccgaaccagacgttgaccctgagtcttgaccaacaaccccaggcggcattgcgtttt
tggttacaacccggcgaaggatccagcgtgggggattatcaacagttgatggcgcagcag
tgtgcggcggatatcagccgctggttgcaggctggtcagcagcaacgtgcgttgttagga
aaagccccggctttgcgaccggtgcaggcatccgacatcaccgtgctggtccgtagccgc
aacgaagccaatcttattcgtgaggcattgaatcagctggcgatcccgtcggtatacctg
tcgaaccgcgatagcgtgtataccacgccggaagcgcgtgaactgctgtggctgctacag
gcggttttggcaccggaacaggagcgtatgctgcgtaccgccctggcaacctcattgttt
gcctttgatgcggcgcaactggatgcgcttgaccaggatgcgcgcggatgggatcaactg
gtggatacttttgcccgctggcagttggtgtggcagcaacgtggtgtattgcccatgctg
cgggagatgatgctggagcgtcaactggcggaaaacctgctggcttccgaaaacggtgag
cgtcgtctgactgacttgctgcatcttggcgagctgttgcaggaggcggccagccagctt
gacagtcctcatgccctggtgcgtcatctggcgcagcagattgcccgcccggacagtcag
gcggccagtcagcaattgcgtctggaaagcgatcgccatctggtgcagatagtcaccatc
cacaaatcgaaagggttgcagtatccccttgtttggctgccatttgccgccggttatcgc
gaggccgatagcgcgttgtatcacgaccgggaaaacttcggggcggtgcttgatctgcaa
aatgatgaggccagccttgagctggcagaacaggagcgtctggcggaggatttgcgcctg
ttatatgtggcgctgacgcgttcggtgtatcactgtagcgttggcgtggcccccctgttc
cgtggcacgcgaaagaaagagggagccagcgatctgcataaaagcgcgttgggttatctg
ctgcaacgcggtgaggcggcaacagcggagcagttggcggcgttgctggcggagatgaac
gctgacggtaccgaagtggtgctggccggggagtccgatgccacgcgctggcaagcgcag
accgtcagtgaagagacattaagcgcacgggaggtcacgcgtgtgctggccgaaccttgg
cgcgttaccagctattcaggcttgcagcagcatggcagcagtcgtttgctggaggtcatg
cctgggtttgatgtggaagcatctggcgatgagtcgggtgaacctcaaccatcagcgttg
acgccccaccatttcccgcgtggtgccgcccccggcacctttctgcatgaattgtttgag
tcgctggatttcactcaaccgccaacggaagcggtgctggagcagcatctgcaacagaat
ggttatccgctgcactggcagccgatgttgagcgcatggattgccagggtcgtcagtaca
ccgcttgatgagcagggtattcagctggcaggagtgcagacaaaagatcgcctggtagag
atggcgttttatctgccgattgagggcatgttgctggccgaaaaaatggataagttggtc
aaaagccatgacgaattatcccgccaggcgccagctctcgattttcgtcaggtgcagggc
atgctgaaaggctttatcgatttagtgtttcgctggcaggggaaatattatttgctggat
tacaaatctaactggttgggtgacagtcatgacgcttacacgccgcaggcgatggcccag
gcgatgatcgaccaccgttacgatttgcagtaccaactctacagcctggcactacaccgt
tatctggagcatcgcctggtggattacgactatgaacagcatttcggtggcgtattctat
ctgtttttgcgcggcatggatggcagctcgcctgccaatggggtgttccatacccgcccc
tcccacgcattcattacccaactggataacctgtttcgcggcgaaggagcgacatcatga
DBGET
integrated database retrieval system
