Pantoea phytobeneficialis: CTZ24_17050
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Entry
CTZ24_17050 CDS
T09899
Symbol
nirD
Name
(GenBank) nitrite reductase (NAD(P)H) small subunit
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho00910
Nitrogen metabolism
ppho01100
Metabolic pathways
ppho01120
Microbial metabolism in diverse environments
ppho01310
Nitrogen cycle
Module
ppho_M00531
Assimilatory nitrate reduction, nitrate => ammonia
ppho_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
CTZ24_17050 (nirD)
Enzymes [BR:
ppho01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
CTZ24_17050 (nirD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox
Rieske_2
Rubredoxin_C
NIR_SIR
Pyr_redox_3
Fer2_BFD
NIR_SIR_ferr
DAO
AlaDh_PNT_C
NAD_binding_8
GIDA
FAD_oxidored
FAD_binding_3
FAD_binding_2
CIF
Rieske_4
Motif
Other DBs
NCBI-ProteinID:
QGR08036
LinkDB
All DBs
Position
3681744..3685844
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AA seq
1366 aa
AA seq
DB search
MKSRRQWRKEPGMQQLIVIGNGMAGMRMVETLVQQAPGRYAITVIGREPHGNYNRVLLSP
VLGREKTFADTLIHTPEWYEEHGVRLLAGEEVRSVDVAGRQLHTDQRSLHWDKLVFACGS
QPRMPTLPGMACPHVLGFRTVRDVERMQAQQGPVVVLGGGLVGVEAAAALRLLGRDVTLL
HHRCWLLDRQLDAQAGALLQQHLTARGIDCRLGVSLQRIDAQQVTLTDGSCLAAQQVVIA
IGVEPEIALAQAAGVPCQRGIQVDRQLHTAIPDVYALGECCEIDGETFGLIAPCLAQALV
LAASLAGQPIDDFHYQENGTRLKVSGIDVFSAGDIRDAPSLTSFDPLSGHYRRLFLRDGV
LAGVLLFGDSTLASRLLTRLQRAEPVDLNALFGLDNNKTQPRAVGKVMMSKPILALVGHG
MVGHHFLEQLVSRDLHQQYHIVVYGDEPQMAYDRVHLTEYFNGKSADDLSLVSDNFFEQH
GIELRCGCEVLAIDTQRRSLRDSHGSELAWDKLVLATGSVPFVPPLPGRDHPRCFVYRTL
ADLDAIADCARQATRGVVIGGGLLGLEAANALKQLGLETHVVEFAPRLMAVQLDDGGAQM
LRGKIAALGVQVHTSKATEAIENQPDGSVQLRFADGSLLATDLVVFSAGIRPRDALARAA
GISMGERGGIVIDDGCATSVSDIYAIGECALWQGQIFGLVAPGYQMARVLAGQLAQETTA
FNGADMSTKLKLLGVEVASFGDAHGRTPGSQSYQWTDNPKGIYKKLVISDDGKTLLGGVL
VGDSSDYASLLQMMLNKMALPEAAESLILPQLAGAPGKALGVAALPDSAQICSCHNVSKG
DICAAVQSGCGDMAALKSCTKAATGCGGCSALVKQVMEHQLASQGVEVKKDICEHFAWSR
QELYHLIRVGDITTFDQLLAQHGRGHGCEICKPLVGSLLASCWNDYLLKPAHLPLQDTND
RYFANIQKDGTYSVVPRVPGGEITPEGLMAIGAVAAQYRLYTKITGGQRIDLFGARLDQL
PAIWEALIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVQDSTAFAIALEHRYKGLRAPHK
IKMAVSGCTRECAEAQSKDIGVIATDKGWNLYVCGNGGMKPRHADLFASDLDDATLIRYV
DRILMFYVRTADRLQRTSVWMDNMEGGLAYLRQVVIDDSLGLGATLEQEMQWVVDRYQCE
WQTTLENPSRRALFTATINSDQPDETLHYAEVRGQRQPLETLTIPSVTLPAEPWSAICEQ
SAIPASAGMGARLGNQRVALFRFGDTVYALEDIEPGTQASVLSRGILGDVAGEPVVISPL
YKQRIRLRDGQSLDNPQHQLRCWPVRLEGGQVWLGNQPLLALAAAS
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcagacggcagtggcgtaaggagccgggcatgcagcaactgattgtcatcggc
aacggtatggcgggtatgcgcatggtggaaactctggtgcagcaagcaccgggccgctac
gccatcacggtgataggccgtgaaccgcacggcaactacaaccgggtgctgctgtcgccg
gtgctgggccgggagaagaccttcgccgacaccctgatccatacgccagagtggtacgag
gaacacggagtcaggttgctggcgggggaggaggtgcgttccgttgatgtcgccgggcgt
cagctccataccgaccagcgcagtctgcactgggacaagctggtatttgcctgtggttcc
cagccacggatgccgaccttacccggtatggcatgcccgcacgtattgggtttccgcacc
gtgcgcgatgtggagcggatgcaggcccagcagggaccggtcgtggtcctcggtggcggg
ctggtgggggtagaagcggcggcggccctgcggttgctggggcgcgatgtcacgctgctg
catcaccgctgctggctgctcgatcgccagctcgatgcgcaggcgggagcgttgttgcaa
caacatctgacggcgcgcggtatcgattgtcgactcggcgtctcgttgcaacggattgat
gcgcagcaggtcacgctgaccgatggtagctgtctggcagcacaacaggtggtgatcgcc
attggcgtggagccggaaatcgcgctggcgcaggcggcgggtgtgccttgtcagcgcggc
attcaggtcgatcgtcaactgcataccgccattcccgatgtgtacgcgctcggcgaatgc
tgtgaaatcgacggtgaaaccttcgggttgatcgccccctgtctggcgcaggctttggtc
ctggcggccagtctggccgggcaaccgattgacgatttccactatcaggagaatgggacg
cggctcaaggtcagcggtattgacgtcttcagcgccggagacatccgcgatgccccctct
ctcaccagtttcgatccgctgtccggacactaccggcggctatttctacgcgacggcgtg
ctggcgggggtgttgctgtttggcgatagcaccctggcctcccgtttactgacccgactt
cagcgggccgaaccggtggatctcaatgcgctgttcggtctggacaataacaagacgcag
cctcgcgctgtaggaaaggtaatgatgagcaaaccgattctcgcgttggttggtcacggt
atggtcggccaccattttctcgaacaactggtcagccgcgatctgcaccagcagtaccat
atcgtggtgtacggtgatgagccgcagatggcctatgaccgcgtacacctgacggagtat
ttcaacggcaagagcgctgatgacctgtcattagtcagtgacaacttctttgaacagcac
ggaattgagctgcgttgcggctgtgaagtgctggcgattgacacgcaacgccgcagcttg
cgtgatagccacggcagcgaactggcatgggataaactggtgctggcgaccggctcggtg
cctttcgtgccaccgctgccagggcgtgaccatccgcgttgttttgtctatcgcacgctg
gcggatctggatgcgatcgccgattgcgcccggcaggcaacgcgcggcgtggtgattggc
ggcggtctgctcggtctggaagccgccaatgcgttaaaacaattgggactggaaacccat
gtggtggagtttgcgccacggctgatggcggtgcagctggatgacggcggcgcgcagatg
ctgcgcggtaaaattgccgcgttaggtgtacaggtacacaccagcaaggcgacggaagcg
attgaaaaccagccggacggcagcgtgcagttacgctttgcggatggcagcctgctggcg
actgacctggtggtgttctctgccgggatccgcccgcgtgatgcgttggcacgggcggcg
ggcatcagcatgggcgagcgtggaggcatcgtgattgatgatggctgcgccaccagcgtc
agcgacatctatgctatcggcgagtgcgcgttgtggcagggacaaatttttggtctggtg
gcgccaggctaccagatggcgcgcgtactggcggggcagttagcgcaagagacaaccgca
tttaacggtgccgacatgagcaccaaactcaagttgctcggtgttgaggtggcgtcattt
ggtgatgcacatggacgtacaccgggcagccagagttatcagtggacggataacccgaaa
ggcatctacaaaaagttggtgatttccgacgacggtaaaaccctgcttggcggtgtgctg
gtgggcgacagcagcgactatgccagcctgttgcagatgatgctgaacaaaatggcgctg
ccggaagcagcggaaagtctgattctaccgcagctggcaggcgcacccggcaaagcattg
ggagtggcggcgctaccggacagcgcgcagatctgttcctgccacaatgtcagcaaaggg
gatatttgcgctgcagtgcaaagtggttgtggtgatatggctgcgctgaaaagctgcacc
aaagccgcgaccggctgcggtggctgtagcgcgctggtgaagcaggtgatggagcatcaa
cttgccagccagggtgtcgaggtgaagaaggatatttgtgaacattttgcctggtcacgg
caggagctgtatcacctgattcgggtgggtgatatcaccacattcgaccaactgctggca
cagcatggtcgtggtcacggttgcgaaatttgcaagccgctggtcggatcgctgttagcc
tcctgctggaatgattacctgctgaaaccggcgcatctgccgttgcaggataccaacgat
cgctactttgccaatatccagaaggacggaacctattcagtggtgccgcgggtgcccggt
ggcgagattacgcccgagggcttgatggcgattggcgcggtggcggcgcagtaccgtctc
tacaccaaaatcaccggcggtcagcgcatcgatctgtttggtgcgcgtcttgatcagctt
ccggcgatttgggaagcgctgatcgctgccggatttgaaaccggccatgcctatggcaaa
tcactgcgcacggtgaaatcctgcgtgggatcgacctggtgccgctatggcgtacaggat
tctactgcgtttgccatcgccctcgagcatcgctacaaagggctgcgcgcaccgcacaaa
atcaaaatggccgtctccggctgcacccgtgaatgtgcggaagcgcaaagcaaagacatt
ggggtgatcgccaccgataagggctggaatctgtacgtttgcggcaacgggggaatgaaa
ccccgccatgccgacctgtttgccagcgatttggatgatgccacgctgatccgctacgtt
gaccgcattctgatgttctatgtacgcaccgctgacaggctgcaacgcaccagcgtgtgg
atggacaacatggaggggggcttggcttatctgcgtcaggtggtgattgacgactcgctc
ggcctgggtgccacgctggaacaggaaatgcagtgggtggtcgatcgttatcagtgcgaa
tggcagaccacgctggagaacccctcgcgtcgggcgctgttcaccgccaccatcaacagc
gaccagccggacgaaaccctgcattacgccgaggtgcgggggcagcgccagccgctggag
acgctgactatcccgagtgtaaccctgcctgcggagccgtggagcgccatttgtgagcaa
agcgccattcctgcctcagcggggatgggtgcccggcttggcaatcagcgcgtggccctg
ttccgcttcggcgacaccgtttatgccctggaagatattgaacccggcactcaggccagc
gtgttgtcgcgtggcatcctgggcgatgtagccggtgagccggtggtgatttcccccttg
tataaacaacgcatccggttgcgggacggccagagcctggataatccgcagcatcagttg
cgttgctggccggtgcgtctggaaggcggtcaggtgtggttgggtaatcagccgctgttg
gcgctggcggcggcatcatga
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