Pantoea phytobeneficialis: CTZ24_18230
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Entry
CTZ24_18230 CDS
T09899
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ppho
Pantoea phytobeneficialis
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppho03019
]
CTZ24_18230
Messenger RNA biogenesis [BR:
ppho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CTZ24_18230
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
8xMP
DraK_HK_N
DUF4900
Motif
Other DBs
NCBI-ProteinID:
QGR08254
UniProt:
A0AAP9H811
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All DBs
Position
complement(3925355..3927301)
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AA seq
648 aa
AA seq
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MRLTTKFSAFITLLSLLAMLLMLVGCAFSFIWLSQQRVETRVQTLATEVDKALLTQSPQD
LTQWLTRLMPVINAEQLELHSGDRMLFRLARHENPMLEDEPNRFIQFDLPLVHSSGLSLR
VVVLDPAKTWFRSFTGAYTLIVIFSVVLIMASLLVMTHRWLNRHWRNMERLEARSERILA
GDRQSRVGEESEWPPKASHAIDLLLHDLREAGEQRLRIDTLIRTFAAQDSRTGLNNRLFF
DNQLATLLEDQEDVGTHGVVMMVRLPDLETHHETLGPALAEEYLFDLINMLSTFVLRYPG
ALLARYFRSDFAVLLPHRTLKEANSIADQLINAVDSLPPMRMLDRDDLIHIGISAWRSGQ
SVPQVMENVEMATRRAALQGGNSWSIGEGNPLEMGRGSVRWRTLLENTQSRGGPRLYQKP
AVLLDGKVHHREMLARVFDGDKEVVSAEFMPLVQQLGMAESWDRQMVTRIAALSEVWPDE
TLALPVNIDSLVQRSFQRWLQKLLLQCSKSQRKRFLFELAEADVCQHINRLVPVFKMLSA
FGCRIAVNQAGLTVVSSAYIKQFPVELIKLDPGLVRNIERRTENQLFVQSLLEVCKSTPT
QVFAAGVRTRAEWQTLAGLGVSGGQGDFFAPSLPVNSNVKKHSQRYRI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaaccacgaagttttctgcgtttattacattattaagcttactggcgatgtta
ctgatgctggtcggctgcgcttttagttttatctggctatcacagcagcgcgttgaaacc
cgcgtacaaacgctggctaccgaagtcgacaaagccctgctcacccagtcgccccaggat
ctgacgcaatggctgacgcgtctgatgccggttatcaatgctgaacaactcgaattacac
agcggtgaccgcatgttgtttcgcctggctcgccatgaaaacccgatgctggaggatgag
ccaaaccgctttattcagtttgatctgccgctggtgcactcatccggtctgtcgctgcgc
gttgtggtactggacccggccaaaacctggtttcgttccttcacgggtgcctacaccttg
atcgttatttttagcgtggtgctgatcatggcctcgctgttggtgatgacgcatcgctgg
ctgaaccgtcactggcgcaatatggagcggttggaagcgcgctcggaacgtattctggcg
ggcgatcgtcagtcgcgcgttggagaggagtcggaatggccgcccaaagccagccacgcc
attgatctgctgctacatgatttacgcgaagcaggcgaacagcgactgcgtatcgacact
ttaattcgcacctttgccgcgcaggattcccgtaccggtctgaataatcgattgttcttc
gacaaccaactggcgaccctgttagaagatcaggaagatgtcggcacgcatggcgtggtg
atgatggtacgtttgcccgatctcgaaacgcatcatgaaaccctcggtccggcactggct
gaagagtatctttttgacctgattaacatgttgtcgacctttgtgctgcgttatcctggc
gccttgctggcgcgctatttccgcagcgacttcgcggtgctgctgccgcaccgcaccctg
aaagaagcgaacagtattgccgatcaactgatcaatgcggtggattcattgccaccgatg
cgcatgctggatcgcgatgatcttatccatattggtatcagcgcctggcgcagcgggcaa
agcgtgccgcaggtgatggaaaatgttgaaatggcgacccgtcgtgcggcgttgcaaggg
gggaacagctggtcaattggcgagggcaaccctcttgagatgggacgtggcagcgtgcgc
tggcgcaccttgctggagaacacccagagccgtggtggaccacgtttgtatcagaagccc
gccgtgttgttggacggtaaagtccatcaccgtgagatgctggctcgcgtctttgatggt
gataaagaagtggtgtcggcggagttcatgccgttggtacagcaactgggcatggctgaa
agctgggaccgtcagatggtgacccgtatcgctgcgttatcagaggtgtggcccgatgaa
acgctggcgttgccggtgaatattgattcactggtacagcgttcttttcagcgctggttg
caaaaacttttactccagtgcagtaaatcgcaaagaaaacgctttttatttgaacttgcc
gaggcggatgtttgtcaacacatcaaccgtttagtgccggttttcaaaatgctcagtgcg
tttggttgtcgcatcgccgtcaaccaggcggggttaacggtagtaagcagcgcctacatc
aagcaatttcccgttgagttaatcaaactggaccccggtctggtgcgcaatattgaacga
cgcacggaaaatcagctttttgtgcaaagcctgttggaggtgtgtaagtccacgccgact
caggtatttgcggctggcgtacgtacgcgtgcggagtggcaaacgctggcggggcttggc
gtatccggcgggcagggcgatttttttgcgccgtcgctgccggtgaacagtaacgtgaaa
aagcattcgcaacgttaccggatatag
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