Pantoea phytobeneficialis: CTZ24_23670
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Entry
CTZ24_23670 CDS
T09899
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppho
Pantoea phytobeneficialis
Pathway
ppho02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CTZ24_23670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppho03021
]
CTZ24_23670
Transcription machinery [BR:
ppho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTZ24_23670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
HTH_Tnp_4
Sigma70_ECF
HTH_11
TnsD
HAC6_helical
HTH_24
GST_C_3
Motif
Other DBs
NCBI-ProteinID:
QGR09475
LinkDB
All DBs
Position
pMSR2B:complement(69661..70182)
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AA seq
173 aa
AA seq
DB search
MLPAAESPAAPSLALFYATNHRWLKHWLTGKLRSAFDADDVAQDTFLRVMSGHHLSDIRD
AKSFLCTLAKRVMVDRFRRNALETAYLELLSQLPEAVAPSPEVQQSQLETLQLLDRMLDG
LGHKARQAFLLSQLDNLTYADIAVQLAVSVSSVKKYMAKATEHCLLFRLEQGL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgttacctgctgctgaatcgcccgctgcgccttctctcgcgctgttctacgccaccaat
caccgctggctcaagcactggctgacgggcaagttgcgttcggcttttgatgcggatgat
gtcgctcaggatacgtttctacgggtgatgtccgggcatcatctgtctgatattcgtgat
gccaaatcgtttctctgtacgctcgccaaacgcgtgatggtggatcgtttccgccgtaac
gcgctggaaaccgcgtatctggaattactcagccaactccctgaagcggtcgccccctca
ccggaagtacaacaaagccaactggaaaccctgcaattactggatcgaatgctggatgga
ctgggtcacaaggcacgtcaggcatttctgctgtcccagttggataaccttacctatgcc
gatattgccgtgcagcttgccgtatccgtcagttcggtgaagaaatatatggcgaaagcc
accgagcattgcctgctgtttcgtctcgagcaggggttgtga
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