Pengzhenrongella phosphoraccumulans: VTA80_07255
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Entry
VTA80_07255 CDS
T10828
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphp03032
]
VTA80_07255 (topA)
03400 DNA repair and recombination proteins [BR:
pphp03400
]
VTA80_07255 (topA)
Enzymes [BR:
pphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VTA80_07255 (topA)
DNA replication proteins [BR:
pphp03032
]
Prokaryotic type
DNA Topoisomerases
VTA80_07255 (topA)
DNA repair and recombination proteins [BR:
pphp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VTA80_07255 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WVT81696
LinkDB
All DBs
Position
complement(1566176..1568995)
Genome browser
AA seq
939 aa
AA seq
DB search
MSRKLVIVESPAKARTIASYLGSGYEVEASVGHIRDLPQPSELPADMKKGPFGKFAVDVT
NGFEPYYVVDADKKKKVAELKRLLKDADELFLATDEDREGEAIAWHLLQELKPKVPVHRM
VFHEITPEAIARALENTRDLDTRLVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGRVQ
SVATRLVVERERERMAFRAADYWDVKGQFATADAGEPVFGARLTTVDGARVATGRDFNDQ
GELTTRSTVHLDEDAARVLVAALETADFAVRSLETKPYTRKPAAPFTTSTLQQEASRKLR
LGSRQTMRTAQSLYENGYITYMRTDSPALSSQAIDAARRQAAELYGAEFVPNAPRIYTSK
AKGAQEAHEAIRPAGDSFRTPAQVARELSGDQFKLYELIWKRTVASQMADARGSTASVKL
GAHASDGRDAVFSASGTVITFRGFMAAYEEGRDTERYADDVAPPSGKGTDDARLPQLAQG
DPVTANDLTADGHQTSPPPRFTEASLIKALEERGIGRPSTYAATISVIQDRGYVSNRGQA
LVPSWLAFAVTRLLEENFHWLVDYDFTASMEEDLDAIAAGDKNRVEWLTRFYFGDADGAG
AGEIEGLSHAVENLGEIDAREVNSIDIGDGITVRVGRYGPYIEEIAVAGAVGDPKRAAVP
EELAPDELTVAKARELLETQAEGDLVLGVDPSTGTTIVARNGRYGPYVTEQLPEPELAPD
LSAAAKKKALAALPKPRTGSLLSTMQLATMTLADALKLLSLPRVVGVDPESGDTITAQNG
RYGPYLKKGTDSRTLPTEDAMFDVTLDEALAIYAQPKRGRGGSAAAPLRELGEDPVSKKP
IVVKEGRFGAYVTDGETNGTLRTEDAVATITLERAAELLADKRARGPVKGRKKTAAKKTA
VKKTAAKKTAATKTAAKSTAAKKTPAKKAATKTTATAQR
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaagctcgtcatcgtggagtcgccggcaaaggcgcgcacgatcgccagctac
ctcggctcggggtacgaggtcgaggccagcgtggggcatatccgtgacctgccgcagccg
tccgagctgcccgcggacatgaagaagggccccttcggcaagttcgccgtcgacgtgacg
aacggcttcgagccgtactacgtggtcgacgccgacaagaagaagaaggtcgccgagctc
aagcggctgctcaaggacgccgacgagctcttcctcgcaactgatgaggaccgcgagggc
gaggccatcgcgtggcacctgctgcaggagctcaagcccaaggtgccggtgcaccggatg
gtgttccacgagatcacccccgaggcgatcgcccgcgcgctcgagaacacccgcgacctc
gacacccggctcgtcgacgcccaggagacgcgccgcatcctcgaccggctgtacggctac
gaggtctcgccggtgctgtggcgcaaggtgcgccagggactgtcggccggccgcgtgcag
tccgtcgcgacccggctcgtcgtcgagcgtgaacgggagcggatggcgttccgcgccgcc
gactactgggacgtcaagggccagttcgcgaccgctgacgcgggcgagcccgtcttcggc
gcccgcctcacgacggtcgacggcgctcgcgtcgcgaccggccgcgacttcaacgaccag
ggcgagctgaccacccggtccaccgtgcacctcgacgaggatgccgcccgggtgctggtc
gcggcgctcgagacggccgacttcgccgtgcgcagcctcgagaccaagccgtacacgcgc
aagcccgccgccccgttcaccacgtcgacgctgcagcaggaggcgtcgcgcaagctgcgc
ctgggttcgcgccagacgatgcgcaccgcgcagtcgctgtacgagaacgggtacatcacc
tatatgcggaccgactcgcccgcgctgagctcgcaggcgatcgacgccgcgcgtcgccag
gccgccgagctgtacggcgcggagttcgtgcccaacgcgccccgcatctacacctcgaag
gccaagggggcccaggaggcccacgaggccatccgccccgcgggtgactcgttccgcacc
ccggcccaggtcgctcgcgagctgtcgggcgaccagttcaagctctacgagctcatctgg
aagcgcactgtcgcctcgcagatggccgacgcccgtgggtcgaccgcctcggtgaagctc
ggtgcgcacgccagcgacggccgcgacgccgtgttctcggcatcgggcaccgtcatcacc
ttccggggcttcatggccgcctacgaggagggtcgcgacaccgagcgctacgcggacgac
gtcgcgccgccgtcgggcaagggcaccgacgacgcccgcctgccccagcttgcgcagggt
gacccggtcacggcgaacgacctgaccgccgacgggcaccagacctccccgccgccgcga
ttcaccgaggcgagcctgatcaaggcgctcgaggagcgcggcatcggtcggccgtcgacc
tacgcggcgacgatctcggtgatccaggaccgcggctacgtgtcgaaccgcgggcaggcg
ctcgtgccgagctggctcgccttcgcggtgacccgcctgctcgaggagaacttccactgg
ctggtcgactacgacttcaccgcaagcatggaggaggacctcgacgcgatcgcggcgggg
gacaagaaccgcgtcgagtggctgacccggttctacttcggcgacgcggacggcgcaggc
gcgggcgagatcgagggtctgagtcacgcggtcgagaacctcggggagatcgacgcacgc
gaggtcaactcgatcgacatcggcgacggcatcacggtgcgcgtgggtcggtacgggccg
tacatcgaggagatcgcggtcgccggcgccgtgggggaccccaagcgggccgccgtcccg
gaagagctggcccccgacgagctcaccgtcgccaaggcgcgcgagctgctcgagacccag
gccgagggcgacctcgtgctcggcgttgacccctcgaccggcacgacgatcgtcgcccgg
aacgggcgctacgggccgtacgtgaccgagcagctgcccgagcccgagctcgcgcccgac
ctgtcggccgccgcgaagaagaaggcgctcgccgcgttgcccaagccgcgcacgggttcg
ctcctgtcgaccatgcagctcgcgaccatgacgctcgcggatgcgctcaagctgctgtcg
ctgccgcgcgtcgtcggggtggatccggagtccggcgacacgatcaccgcccagaacggg
cgctacgggccgtacctgaagaagggcacggactcgcgcacgctgccgaccgaggacgcg
atgttcgacgtcacgctcgacgaggcgctcgcgatctatgcgcagcccaagcgtggccgc
ggcggttcggcggccgccccgctgcgcgagctcggcgaggacccggtctcgaagaagccg
atcgtcgtcaaggagggccggttcggggcgtacgtgaccgacggcgagacgaacgggacg
ctgcggaccgaggacgcggtcgcgacgatcacgctcgagcgagcggccgagctgctcgcc
gacaagcgcgcccgcggcccggtcaagggccgcaagaagacggcagcgaagaagacggcg
gtcaagaagacggctgcgaagaagacggcggccacgaagacggcagcgaagtcgaccgca
gcgaagaagacgccggcgaagaaggccgccacgaagacgacggcgaccgcgcagcgctga
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