Pengzhenrongella phosphoraccumulans: VTA80_12295
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Entry
VTA80_12295 CDS
T10828
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VTA80_12295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphp03021
]
VTA80_12295
03400 DNA repair and recombination proteins [BR:
pphp03400
]
VTA80_12295
Enzymes [BR:
pphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VTA80_12295
Transcription machinery [BR:
pphp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VTA80_12295
DNA repair and recombination proteins [BR:
pphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VTA80_12295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WVT78353
LinkDB
All DBs
Position
2665501..2669376
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNVFDELRIGLATAEDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHVELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAGRHEDLPNLQNEIDLEKKEITDRRDNDIEARAKKLEAD
LAELEAEGARADARRKVRDSAEREMTQLRKRSDLELERLDTVWDRFKNLKVADLEGDELL
YRQLSDRYGNYFEGSMGAAAIQKRLQAFDLEAEAESLRDTIKNGKGQRKTRALKRLKVVN
AFLTTSNTPEGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVMLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLYHLTSDKADALGAGR
AFSSVSEAMMAFDAHTIDLNAEILIRLEDFIPPVDGFDAPEGWTGAEPVIFGTTLGRALF
NELLPVDYPYENGVVDKKRLSTIVNDLAERYPKVEVAASLDALKAAGFSWATRSGVTISI
SDVITPVEKAAILEEHEGRAAKVQTQYEKGLITDDERRQELIEIWTQATDKVAEAMRTNF
PPSSTIFRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIAT
HGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTERGLTMTIGVPAGDGTLRRH
DKVETSVYTRTLATTVEVDGKVLGHSGDDVGDVLLDALLAAGVTELKIRSVLTCESRVGT
CAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVQ
ELFEARTPKGEGPIAEFSGQVTIDESDRTRRIVLTPDDGSEELAYPITKRSRLLVADGDH
VEVGTQLVQGAVDPKKVLRILGPRATQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRR
VTVLDSGDSDLLPGELAERGRFEDANRRAVAEGGQPASGRPELMGITKASLATDSWLSAA
SFQETTRVLTEASMSGRSDPLLGLKENVIIGKLIPAGTGLPRYGNVSVEPTEEAKAELYP
SFGYDEIDFPALGLGSGEAIPLEDLDFGDFR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgatgagttgcgtatcggtctggccacggccgaagacatc
cgcgcctggtctcatggcgaggtcaagaagcccgaaaccatcaactaccgcacgctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtcacgcggtccaaggtgcgccgtgagcgcatgggccacgtcgagctcgccgcaccc
gtgacccacatctggttcttcaagggtgtgccgtcccgcctgggctacctgctcgacctc
gcgccgaaggacctcgagaaggtcatttacttcgccgcgtacatgatcacgagcgtcgac
gaggccggtcggcacgaggacctccccaacctccagaacgagatcgacctggagaagaag
gagatcaccgaccgccgcgacaacgacatcgaggcccgcgccaagaagctcgaggccgac
ctggccgagctcgaggccgagggtgctcgcgccgacgcacgccgcaaggtgcgcgactcc
gccgagcgcgagatgacgcagctgcgcaagcgctcggacctcgagctcgagcgcctcgac
acggtctgggaccggttcaagaacctcaaggtcgctgacctcgagggcgacgagctgctc
taccgccagctgtcggaccgctacggcaactacttcgagggttcgatgggtgccgccgcg
atccagaagcggctgcaggccttcgacctcgaggccgaggccgagtcgctgcgcgacacg
atcaagaacggcaagggccagcgcaagacgcgcgcgctcaagcggctcaaggtcgtcaac
gcgttcctcaccacgtcgaacacgcccgagggcatggtcctggacgccgtcccggtcatc
cccccggacctgcgcccgatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccggaacaaccgcctcaagcggctgctcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggacgcccggtgaccggaccgggcaaccgcccgctcaag
tccatctcggacatgctcaagggcaagcaggggcggttccgtcagaacctcctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagcagatggcgctcgagctcttcaagcccttcgtcatgaagcggctc
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcgcccgc
cccgtggtctgggatgtcctcgaagaggtcatcacggagcacccggtcatgctcaaccgt
gcccccacgctccaccgtctcggcatccaggccttcgagccccagctggtcgagggcaag
gcgatccacctgcacccgctcgtctgcggcgcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgcccctgagcgcggaggcccaggccgaggcccggatcctcatgctc
tcgagcaacaacatcctcaagccgtccgacggacgtcccgtgaccatgccctcccaggac
atgatcatcgggctgtaccacctgacgtcggacaaggcggacgccctgggcgccggccgg
gccttcagctcggtctccgaggcgatgatggcgttcgatgctcacaccatcgacctgaac
gccgagatcctcatccgcctcgaggacttcatcccgcccgtggacggcttcgacgccccc
gagggctggaccggcgctgagccggtcatcttcggcacgacgctcggccgggccctgttc
aacgagttgctgcccgtggactacccgtacgagaacggcgtcgtcgacaagaagcgtctg
tcgacgatcgtcaacgacctcgccgagcggtacccgaaggtggaggtcgcggcgagcctg
gacgcgctcaaggcggccggcttcagctgggccacccgctcgggcgtcaccatctcgatc
tccgacgtgatcaccccggtcgagaaggccgcgatcctcgaggagcacgaggggcgcgcc
gccaaggtccagacccagtacgagaagggtctgatcaccgacgacgagcgccgccaggag
ctcatcgagatctggacccaggcgaccgacaaggtggccgaggcgatgcggacgaacttc
ccgccgagctcgaccatcttccggatggtcggttcaggtgcccgtggtaactggatgcag
gtccgtcagatcgccggtatgcgcggccttgtggcgaacccgaagggcgagatcatcccg
cgcccgatcaagtccaactaccgcgagggcctgtccgtccttgagtacttcatcgccacg
cacggcgcccgcaaggggctggcggacaccgcactgcggaccgccgactccgggtacctc
acgcgtcggctcgtggacgtctcccaggacgtcatcgtccgcgaggacgactgcggcacc
gagcgcggcctgaccatgacgatcggcgtcccggccggcgacggcaccctgcgccgccac
gacaaggtcgagacgagcgtctacacccggacgctcgccacgacggtcgaggtcgacggc
aaggttctcgggcactccggggacgacgtcggcgacgtgctcctcgacgccctgctcgcc
gccggggtcaccgagctcaagatccgctcggtcctcacgtgcgagtcgcgggtcggtacg
tgcgccaagtgctacggccggtcgctcgcgacgggcaagctcgtcgacatcggcgaggcc
gtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcagctcacgatgcgtacc
ttccacaccggtggtgtggcctcggccgacgacatcacgcagggtctgccccgcgtgcag
gagctcttcgaggcccgcacccccaagggtgagggacccatcgcggagttctccggtcag
gtcacgatcgacgagtccgaccggacccgccgcatcgtgctcaccccggacgacggctcc
gaggagctcgcctacccgatcaccaagcggtctcgcctgctggtggccgacggcgatcac
gtcgaggtcggcacccagctcgtccagggcgccgtcgacccgaagaaggtgctgcgcatc
ctcggcccgcgggccacgcagaagcacctcgtcgatgaggtccaggaggtctaccgctcg
cagggcgtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcggcgc
gtgacggttctcgactccggtgactcggacctgctgcccggcgagctcgccgagcgtggc
cggttcgaggatgccaaccgccgtgcggtcgcggagggtggccagccggcctcgggtcgt
cccgagctcatgggcatcaccaaggcctcgctcgcgaccgactcgtggctctcggcggcc
tccttccaggagaccacccgcgtgctgaccgaggcgtcgatgagcggccgcagcgacccg
ctgctgggcctcaaggagaacgtcatcatcggcaagctcatcccggcaggtaccggtctt
ccccggtacggcaacgtgtcggtcgagcccaccgaagaggcgaaggctgagctgtacccg
agcttcgggtacgacgagatcgacttccccgccctgggcctcggctcgggcgaagcgatc
ccgctggaagacctcgacttcggggacttccgctga
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