Pengzhenrongella phosphoraccumulans: VTA80_17405
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Entry
VTA80_17405 CDS
T10828
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VTA80_17405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphp03400
]
VTA80_17405
Enzymes [BR:
pphp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VTA80_17405
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VTA80_17405
DNA repair and recombination proteins [BR:
pphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VTA80_17405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WVT79321
LinkDB
All DBs
Position
complement(3776652..3777527)
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AA seq
291 aa
AA seq
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MPELPEVEALARFLRERAVGRVLAAVDIGSISALKTFAPAPADLVGRPVVDVERHGKWLD
VTTSGPHLVFHLARAGWVRWYDSAPTGPVRPGKSPLALRARLADGAGFDLTEAGTRKRLA
VHIVEDPATIRAIATLGVEPLGPDFTVERLGELLAARNQQIKGLLRDQSTIAGIGNAYSD
EILHAARESPFALTRSFDAKRTALLHAAVVDVLNGAVASSSGKPAAELKDAKRRGMRVHA
RTGQPCPGWNGVPCGDTVHEVSFADSTLQYCPTCQTGGRPLADRRLSRLLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttccggaggtcgaggcgctcgcgcggttcctgcgcgaacgcgcggtcggg
cgcgtgctggcggcggtcgacatcgggtcgatcagtgcgctgaagacgttcgcccccgcc
ccggccgacctcgtcgggcgcccggtggtcgacgtcgagcggcacgggaagtggctcgat
gtgacgacgtccggcccgcacctcgtctttcacctcgcccgggcgggctgggtgcgctgg
tacgactcggcccccacgggcccggtccggccgggcaaatccccgctcgccctgcgagcg
cgactggccgacggcgcggggttcgacctcaccgaggccggcacccgcaagcggctcgcc
gtgcacatcgtcgaggacccggccacgatccgcgcgatcgcgacgctcggggtggagcca
ctcggccctgacttcaccgtcgagcgcctgggcgagctgctcgccgcccgcaaccagcag
atcaagggcctgctgcgggaccagtcgacgatcgcggggatcggcaacgcgtactcggac
gagatcctgcacgcggcgcgcgagagcccgttcgcactgacccgctccttcgatgcgaag
cggacggcactgctgcacgccgccgtcgtcgacgtgctcaacggcgcggtcgcgtcgtcg
tcgggcaagcccgccgcggagctgaaggacgccaagcgacgcgggatgcgcgtgcacgcg
cggaccgggcagccatgcccgggctggaacggggtgccgtgcggcgacacggtgcatgag
gtgtcgttcgccgactccacgctgcagtactgcccgacgtgccagacgggcggccgaccg
ctggccgaccggcggctgtcgcgcctgctgcgttag
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