Pengzhenrongella phosphoraccumulans: VTA80_17530
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Entry
VTA80_17530 CDS
T10828
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VTA80_17530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphp03019
]
VTA80_17530
Messenger RNA biogenesis [BR:
pphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VTA80_17530
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
DUF4699
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
WVT79344
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All DBs
Position
3803533..3805218
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AA seq
561 aa
AA seq
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MSHPHPELDLPPALPDGALRIVALGGLGEIGRNMTVFETEGRLLVVDCGVLFPEDNQPGV
DLILPDFAYLADRLEDIEAIVLTHGHEDHIGAVPYLLRLRGDIPLVGSQLTLAFLEAKLK
EFRLDSLTLVVAEGQTETFGPFECEFVAVNHSIPDALAVAIRTRAGTVLHTGDFKMDQLP
LDGRVTDLRAFGRLGEAGVDLFMVDSTNAEVPGFVTPEREIGPVLDGVFAAATRRIVVAS
FSSHVHRVQQVVDAAARHGRRVAFVGRSMVRNMNIAADLGYLTLPAGVLIEQKKADALPG
DEIVLMCTGSQGEPMAALSRIANRDHRIVVGPGDTVILASSLIPGNENAVYRVINGLTRC
GATVVHGGNAKVHVSGHAAAGELLYCYNIVRPRNVLPVHGEVRHLVANAALAVSTGVPAD
RVLVAEDGVVIDLTDGLARVVGAVPCGYVYVDGSSVGGVTDAELKDRRILGEEGFISIFA
VVDSATGRVLAGPHLHARGFAESDEVFDQIVPQVTAAIEAATAGGAVDVFQLEQVVRQVV
GRWVSSQLKRRPLIFPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcacccgcatcccgagctggaccttccccccgcgctccccgacggggcgctgcgc
atcgtggcgctcggcggtctcggcgagatcggccgcaacatgaccgtgttcgagaccgag
gggcggctgctcgtcgtcgactgcggcgtgctcttcccggaggacaaccagcccggcgtc
gacctgatcctgccggacttcgcctacctcgccgatcggctcgaggacatcgaggcgatc
gtgctcacgcacggccacgaggaccacatcggggccgtgccgtacctgttgcggctgcgc
ggcgacatcccgttggtgggttcgcagctcacgctcgcgttcctcgaggccaagctcaag
gagttccgcctcgactcgctcacgctggtcgtggccgaggggcagaccgagacgttcggc
ccgttcgagtgcgagttcgtcgctgtcaaccactcgatcccggatgcgctcgcggtcgcg
atccgcacccgcgcgggcacggtgctgcacaccggcgacttcaagatggaccagctcccg
ctcgacgggcgggtcaccgacctgcgcgcgttcggccggctgggcgaggcgggggtcgac
ctgttcatggtcgactccacgaacgccgaggtccccggcttcgtcaccccggagcgcgag
atcggcccggtgctcgacggcgtgtttgcggcggcgacccgccggatcgtggtcgcgtcg
ttctcctcgcacgtgcaccgcgtgcagcaggtcgtggacgccgctgcgcgccacggtcgc
cgggtcgccttcgtcgggcgctcgatggtccgcaacatgaacatcgccgccgacctcggc
tacctcacccttcccgcgggcgtcctcatcgagcagaagaaggcggacgccctgcccggc
gacgagatcgtgctcatgtgcacgggctcccagggcgagccgatggccgcgctgtcgcgc
atcgcgaaccgggaccaccggatcgtcgtcggcccgggggacaccgtgatcctggcgtcg
tcgctgatcccgggaaacgagaacgccgtctaccgcgtgatcaacgggctcacccggtgc
ggggcgaccgtcgtgcacggcgggaacgccaaggtgcacgtctcggggcacgctgccgcc
ggcgagctcctgtactgctacaacatcgtgcgcccgcgcaacgtgctgccggtgcacggc
gaggtgcggcacctcgtcgcgaacgcggcgctcgcggtgtcgaccggggtgccggccgac
cgggtgctggtcgccgaggacggggtcgtgatcgacctcaccgacgggctcgcccgcgtg
gtcggcgcggtgccctgcgggtacgtgtacgtcgacggctcgagcgtcggtggggtcacc
gacgcggagctcaaggaccgccggatcctcggtgaggagggcttcatctcgatcttcgcc
gtcgtggactccgccacgggtcgcgtgctcgccggcccgcacctgcacgcacggggattc
gccgagtcggacgaggtgttcgaccagatcgtgccgcaggtcaccgccgccatcgaggcc
gcgacggccgggggcgccgtggatgtcttccagctcgagcaggtcgtccggcaggtcgtc
gggcggtgggtgtcgtcgcagctcaagcgtcggccgctgatctttcccgtcgtggtcgag
gcgtag
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