Pengzhenrongella phosphoraccumulans: VTA80_20680
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Entry
VTA80_20680 CDS
T10828
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VTA80_20680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphp03400
]
VTA80_20680 (ligD)
Enzymes [BR:
pphp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VTA80_20680 (ligD)
DNA repair and recombination proteins [BR:
pphp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VTA80_20680 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WVT79920
LinkDB
All DBs
Position
complement(4485484..4486386)
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AA seq
300 aa
AA seq
DB search
MNPGDGGQLVDVDGRRVRVSHLDRVMYPAVGMTKAEVIDYYSRVAVALLPQLRDRPVTRI
RYPQGVDGEKFFEKNIPAGAPLWLRRLTLRAAPGSLDEGKELTFPFVDDLAALVWTANQG
ALELHTPQWRVGPHDEVLAPDRLVIDLDPGPPAGLAECAQVARLVAERLRADGLDAIPVT
SGSKGLQLYSSLTGTHPVDDVRRYARVLAFALAREHPGLIVAVMRKDLRAGRVLLDWSQN
HPGKTTITPYSLRGRELPRVAAPRTWAELADDGLDQLAPDDVLDRLERHGDPFLRGSAAD
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccccggtgatggtggccagctcgtcgacgtggacggacgccgggtgcgcgtcagc
cacctggaccgcgtcatgtaccccgccgtcgggatgaccaaggcggaggtgatcgactac
tactcgcgggtcgccgtcgcgctgcttccccagctccgcgaccgacccgtcacccgcatc
cggtacccgcagggggtcgacggggagaagttcttcgagaagaacatcccggcgggtgca
cctctgtggctccggcgcctgacgctgcgcgccgcgcccggctcgctggacgagggcaag
gagctgacctttccgttcgtcgacgacctggctgcgctcgtgtggaccgcgaaccagggc
gcgctcgagctccacaccccgcagtggcgggtggggccgcacgacgaggtgctcgcgccg
gaccggctcgtgatcgatctcgatcccggtccgcccgccgggctggcggagtgtgcccag
gtggcccgcctcgtcgccgagcggttgcgcgcggacggtctcgatgccatccccgtcacg
tcggggagcaaaggcctgcagctctactcctcgctcaccggcacccatccggtcgacgac
gtgcgccggtacgcccgcgtgctggcctttgcgctcgcacgagagcacccggggctgatc
gtcgccgtcatgcgcaaggacctgcgcgccggccgggtgctgctcgactggtcgcagaac
caccccggcaaaaccaccatcacgccctactcgctgcgcgggcgggagctcccccgggtt
gcggcaccccggacgtgggccgagctagccgacgacggtctggaccagctcgccccggac
gatgtcctcgaccggctcgaacgccacggcgatccgttcctgcgagggtccgcggctgac
tga
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