Pengzhenrongella phosphoraccumulans: VTA80_20735
Help
Entry
VTA80_20735 CDS
T10828
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VTA80_20735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphp03019
]
VTA80_20735
03009 Ribosome biogenesis [BR:
pphp03009
]
VTA80_20735
Enzymes [BR:
pphp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VTA80_20735
Messenger RNA biogenesis [BR:
pphp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VTA80_20735
Ribosome biogenesis [BR:
pphp03009
]
Prokaryotic type
rRNA helicases
VTA80_20735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WVT79929
LinkDB
All DBs
Position
complement(4497479..4499353)
Genome browser
AA seq
624 aa
AA seq
DB search
MTISHDSIAPSDSTSTERVATSPSFDELNLPAALLRAVADLGFTEPSAIQSQAIPPLLAG
RDITGVAQTGTGKTAAFGLPLLAAIDPQLGRVQALVLAPTRELAMQTAEAIESFAKHMHG
VEVIAIYGGSPFVPQQRALARGAQIVVGTPGRVIDHIERGTLHLDDVRFLVLDEGDEMLR
MGFAEDVDKIFSFAPVERQVALFSATMPPAIRRVANQHMTNPVEIATSRQSSTVTTVKQS
YAVVPFRHKAGALARILAVTEAEAAIVFVRTRGAAEEVGSALVERGISAAYISGDVAQGE
REKIVERLRSGALNVLVATDVAARGLDVDRIGLVVNFDAPSEPEIYVHRIGRTGRAGRTG
EALTFVTPSEQHRLRQIERLTRTPLKEFTLPTPADVSAHRVQQLLGKVNARTEAGRLDLY
REAVAVFLAQNPEVDIEDLVASLAALAVGDDGPTARTNHGDDLDEALSRARMSPERPERG
GRNDSRDSRGDRGENRNGPRGGERSRRTEGGTRYRVAVGTSHGAQPGAIVGALTNEGGLT
GKDLGKIDIFPSFSLVEISGDLSQEAFDRISKARVAGQPLRIRLDDGPAPRSTHAPSRPT
GSSTGPREHRAPSSDRKTYQRSTY
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttctcatgactccatcgcgccctcggacagcacgtccaccgagcgcgtcgcg
acttccccgagctttgacgagctgaacctccccgcagcgctgctgcgcgccgtcgccgac
ctcggcttcacggagccctccgccatccagtcgcaggcgatcccgccgctgctggccggc
cgcgacatcaccggcgtggctcagaccggaaccggcaagacggcggccttcggtctgccg
ctgctcgccgcgatcgacccgcagctcggccgggtgcaggccctcgtgctcgccccgacc
cgcgagctcgcgatgcagaccgctgaggcgatcgagtcgttcgccaagcacatgcacggc
gtcgaggtcatcgcgatctacggtggctcgcccttcgtgccgcagcagcgcgccctggcc
cgcggcgcgcagatcgtcgtcggtacccccggccgcgtcatcgaccacatcgagcgcggc
acgctgcacctcgacgacgtgcgcttcctcgtcctggacgagggcgacgagatgctgcgc
atgggcttcgccgaggacgtcgacaagatcttcagcttcgccccggtcgagcgtcaggtc
gccctcttctccgcgaccatgccgccggcgatccgccgcgtggccaaccagcacatgacg
aaccccgtcgagatcgccacctcgcggcagtcctcgacggtcaccaccgtcaagcagtcg
tacgcggtcgtgccgttccggcacaaggccggcgcgctcgcccggatcctcgcggtgacc
gaggccgaggccgcgatcgtcttcgtgcgcacccggggtgcggccgaagaggtcggcagc
gcgctcgtcgagcgcggcatctccgccgcctacatctccggcgacgtcgcccagggcgag
cgcgagaagatcgtcgagcgcctgcgcagcggcgctctgaacgtgctggtcgccaccgac
gtcgccgcccgcgggctcgacgtcgaccggatcggcctcgtcgtgaacttcgacgcgccg
agcgagccggagatctacgtgcaccgcatcggtcgcaccggccgcgccgggcgaaccggt
gaggcgctcacgttcgtcacgccgagcgagcagcaccgcctgcgccagatcgagcgcctg
acgcgcacgccgctgaaggagttcacgctcccgacgccggccgacgtctcggcccaccgg
gtgcagcagctgctgggcaaggtcaacgcgcgcaccgaggcgggtcgcctcgacctgtac
cgcgaggccgtcgccgtcttcctggcgcagaaccccgaggtcgacatcgaggacctcgtg
gcctcgctcgctgcgctcgccgtcggcgacgacggccccacggcccgcacgaaccacggc
gacgacctcgacgaggcgctgagccgggcgcgcatgagccccgagcggcccgagcgtggc
ggccgcaacgattcccgcgacagccgtggcgaccgtggcgagaaccgcaacggcccccgc
ggtggcgagcgttcgcgccgcaccgagggcggcacgcggtaccgcgtcgcggtcggcacg
tcgcacggcgcacagccgggcgcgatcgtcggcgccctgaccaacgagggcggcctcacg
ggcaaggacctcgggaagatcgacatcttcccgagcttcagcctcgtggagatctccggg
gacctcagccaggaggccttcgaccgcatctccaaggcccgggtcgccggccagccgctg
cgcatccggctcgacgacggccccgcgccccgctcgacccacgcgccgtcgcgtccgacc
ggttccagcaccggtccgcgtgagcaccgggcgccctcgtccgaccgcaagacgtaccag
cgctcgacgtactga
DBGET
integrated database retrieval system
