Pannonibacter phragmitetus: APZ00_00310
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Entry
APZ00_00310 CDS
T04214
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ00_00310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_00310
03009 Ribosome biogenesis [BR:
pphr03009
]
APZ00_00310
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APZ00_00310
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APZ00_00310
Ribosome biogenesis [BR:
pphr03009
]
Prokaryotic type
rRNA helicases
APZ00_00310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALV25708
UniProt:
A0A0U3PDN7
LinkDB
All DBs
Position
66775..68811
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AA seq
678 aa
AA seq
DB search
MIETHAVAPALAAALAKRGYSSLTPVQETILADAPADADLLVSAQTGSGKTVAFGLALAP
TLLGDDEHLGPAGAPVALAIAPTRELALQVKAELTWLYEQAGAQTASCVGGMDPRAERRA
LERGAHIVVGTPGRLRDHIERGALDLSGIRAVVLDEADEMLDLGFREDLEFILDAAPEDR
RTLMFSATVPKPIADLAQRFQRNAVRLTTISGREQHVDIDYIAMPVVPNERENAIINILR
FHEAQKAIVFCATREAVNRLTSRLANRGFSVVALSGELSQAERSHALQAMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPTGKAALLHRSGRTGRAGRKGSSVVVVPFPRRRAAERLL
QLAGVKAEWREAPSANAIRAQDKARLLADPVLNEPAEEEDLETARELLAVHDAERIAAAF
VRLYQLRLPPPEELTEDSFEARGPRERGDRGDRGPRDDFGGGKSFEVRNKFEDGVWFRLS
LGHKHRADPRWLLPMICRAGHVTKKEVGAIKIGNTETLFEIMGGHAEKYADVIRRDGSGE
RGVVIEPADVRGGFAPSFRGNDEDGPSRYERARERNTGRGFGGGAPAGRGGPAPRRRRFE
DDEPRPTHPAFAPMDEAPLDRGPKRGKRGPDGGGFGGAPAGEGFAPRKGKPAFKDGGPKK
AAHRKGDGVKKKSKKQEG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagacgcacgccgttgcaccggcgctggccgccgctttggcaaaacggggctat
tccagccttactccggttcaggaaaccatcctggccgacgcccccgcagacgccgacctt
ctggtttccgcccagaccggctccggcaagactgttgccttcggcctcgcccttgctccg
acgctgcttggagacgatgaacacctcggccccgccggtgcgccggtggcccttgccatc
gccccgacccgcgagctggccctgcaggtcaaggctgagctgacctggctttatgagcag
gctggcgcccagaccgcgtcctgtgttggcggcatggacccgcgcgccgagcgccgggct
ctcgaacgcggcgcccacatcgtcgtcggcacacctggacgcctgcgcgaccacatcgaa
cgcggcgccctcgacctttccggcatccgcgccgtggttctggacgaagcggacgaaatg
ctggacctcggcttccgtgaggatctggagttcattctggacgctgctccggaagaccgc
cgcacactgatgttctcggccaccgtgccgaaaccgattgccgatctcgcccagcgcttc
cagcgcaacgccgtgcgcctgaccacgatcagcggccgcgagcagcatgtcgacatcgac
tatatcgcgatgccggtcgtgccgaacgagcgtgagaacgccatcatcaacattctgcgc
ttccatgaggcccagaaggcgatcgtgttctgcgccacccgcgaggcggtgaaccggctg
acgtcgcgtcttgccaaccggggcttctcggtcgtggcgctgtcgggcgagttgagccag
gccgagcgcagccatgcgctgcaggccatgcgtgatggccgtgcccgtgtctgcgtcgcc
acggatgtggccgcacgcggcatcgacctgccgaaccttgatctcgtcattcacgccgac
ctgccgaccggcaaggccgccctgctgcaccgctctggccgtacgggccgcgccggccgc
aagggatcgagcgttgtcgtcgtgcccttcccgcgccgccgcgccgcagagcgcctgctg
cagctggccggtgtgaaggccgaatggcgtgaagccccctccgccaatgccatccgcgcc
caggacaaggcccgtcttcttgccgatccggttctgaacgaaccggcagaagaagaagat
ctggagacggcccgcgagcttctggccgtgcatgatgccgagcgtatcgcggcggccttc
gtgcgcctgtaccagctgcgcctgccgccgccggaagagctgacggaagacagctttgaa
gcccgcggcccgcgtgagcgtggtgacagaggagacagggggccgcgtgatgacttcggc
ggcggcaagagcttcgaagtccgcaacaagttcgaagatggcgtctggttccgcctgtcc
ctcggccacaagcaccgcgccgacccgcgctggctgctgccgatgatctgccgcgccggc
cacgtgacgaagaaggaagtgggtgccatcaagatcggcaacaccgaaaccctcttcgag
atcatgggcggccacgcggagaaatatgccgatgtgatccgccgcgatggctccggcgag
cgcggtgtggtgatcgagcctgccgacgtgcgcggcggctttgccccttccttccgtggc
aatgacgaggacggcccgagccgttacgagcgcgcccgtgaacgcaacaccggccgcggc
ttcggtggcggcgcccccgctggccgtggcggcccggctccgcgccgcaggcgtttcgag
gatgatgaaccgcgcccgacccatccggcctttgccccgatggacgaggccccgctcgac
cgtggcccgaagcgcggcaagcgcggccctgacggcggcggcttcggcggcgcaccagcc
ggtgaaggcttcgccccgcgcaagggcaagccggccttcaaggacggcggcccgaagaag
gccgcccaccgcaagggcgacggcgtgaagaagaagtcgaagaagcaggaaggctga
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