Pannonibacter phragmitetus: APZ00_00840
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Entry
APZ00_00840 CDS
T04214
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ00_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_00840
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APZ00_00840
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APZ00_00840
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Helicase_RecD
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALV29774
UniProt:
A0A0U3FTX5
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All DBs
Position
complement(186145..187575)
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AA seq
476 aa
AA seq
DB search
MTQFEALGLSQSILKAIAAIGYDQPTPIQREAIPLILAGNDLMGLAQTGTGKTAAFGLPL
VERMLANPKPAPARATRALILAPTRELVNQIAQNLIGFIKSTPLQVATIMGGVSIGPQIK
RMSRGCDILVATPGRLLDLIDRNALRLDQVEYLVLDEADQMLDLGFIHALRKIANLVPKK
RQTLLFSATMPKQIEELSRSYLTDPVRVEVAPAGRTADKVTQCVHFVSNGDKISLLINCL
SERPDDLSLVFARTKHGADKVVRRLEAAGFKANAIHGNKSQNQRDRAIKELKSGETRILV
ATDVAARGIDIPGVSHVYNLDLPDVPESYVHRIGRTARAGADGDAIAFCAPDEIGLLRDI
ERLTGIRIPVASGEAPAEGRAAAKRPARGGGQQGRGQGQGREQGRGEQGRGYGARSEGGR
GRGEGGKGGFGNGHGKPHGGQARKPGSGGQRRPQNGGPAQIAAQVQSRSDRRDARP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgactcagtttgaagctctcgggctttcccagtcgatcctcaaggccatcgccgctatc
ggctacgaccagccgaccccgatccagcgcgaagccatcccgctcattctcgccggcaat
gacctgatgggccttgcccagaccggcaccggcaagaccgccgctttcggcctgccgctg
gtcgagcgcatgctcgccaaccccaagccggctccggcccgcgccacccgcgcgctgatc
ctggcgccgacccgcgaactggtgaaccagatcgcacagaacctcatcggcttcatcaag
tcgacgccgctgcaggttgccactatcatgggcggtgtttccatcggcccgcagatcaag
cgcatgtcccgtggctgcgacattctcgttgccacgcccggccgtctgctcgatctgatc
gaccgcaacgccctgcgccttgaccaggtggaatatctggtgctggacgaagccgaccag
atgctggacctcggcttcatccacgccctgcgcaagatcgccaatctggtgccgaagaag
cgccagaccctgctgttctcggccaccatgccgaagcagatcgaggaactgtcccgctcc
tacctgaccgacccggtccgcgtggaggtggctccggctggccgcacggcggacaaggtg
acccagtgcgttcacttcgtctcgaacggcgacaagatcagcctgctgatcaactgcctg
tccgagcgccccgacgatctgtcgctggtctttgcccgcaccaagcatggcgcggacaag
gtggtgcgccgtctggaagctgccggtttcaaggcgaatgccatccatggcaacaagagc
cagaaccagcgtgaccgcgccatcaaggaactgaagtccggcgagacccgcattctcgtg
gccaccgatgtggctgcgcgcggcatcgacattccgggcgtcagccacgtctacaacctc
gacctgccggatgtgccggaaagctacgtgcaccgcatcggccgtaccgcccgtgcaggc
gccgatggcgatgccatcgccttctgcgcaccggacgaaatcggccttctgcgtgacatc
gagcgtctgacgggcattcgcatccccgttgccagcggtgaagcaccggccgaaggccgt
gctgctgccaagcgcccggcacgcggtggcggccagcagggccgtggccagggccaggga
cgcgaacagggccgtggtgaacagggccgtggctacggtgcccgctccgaaggcggccgt
ggccgtggtgaaggcggcaagggtggttttggcaatggtcatggcaagccgcatggcggt
caggcccgtaagcccggcagcggcggccagcgccgcccgcagaacggcggcccggcccag
attgccgcgcaggtccagtcccgcagcgaccgtcgcgacgcccgcccgtaa
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