Pannonibacter phragmitetus: APZ00_04285 Help Entry APZ00_04285       CDS       T04214                                  Name (GenBank) RNA polymerase sigma-54 factor   KO K03092   RNA polymerase sigma-54 factor Organism pphr  Pannonibacter phragmitetus Pathway pphr02020   Two-component system pphr02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:pphr00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     APZ00_04285  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     APZ00_04285  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pphr03021]     APZ00_04285 Transcription machinery [BR:pphr03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      APZ00_04285 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_3 Arg_repressor HTH_38 Motif Other DBs NCBI-ProteinID:  ALV26392 UniProt:  A0A0U3N0R1 LinkDB All DBs Position complement(899221..900789) Genome browser AA seq 522 aa AA seqDB search MAISTKLEMRQSQSLIMTPQLMQAIKLLQMSNLDLVAYVEAELERNPLLERTESGDGTGA ADGQGGDHDGASDASGGDDFEAGGGEFSSSDGAPSEWLKSDLEPQAESIASQMDTDLGNV FPDEPGVSAAPEPASLLGIDSHRASSSASSEDYNLEAFVAEEESLIQVLMDQMHLAFADA VDKIIGQHLINSLDENGYLQLDLEEAAAQLGIPAARIEAVLAVMQGFEPSGVFARSLAEC LALQLKERNRFDPAMEAMIAHIELLARHDYPALRRICGVDEEDLADMIAEIKALDPRPGR AYGSSIVQPMVPDVLVRPASDGGWTVELNTETLPRVLVNQTYFASITRTARNETERSYLT DCLQTANWLVKSLDQRAKTILKVATEIVRQQDGFLTYGIEHLRPLNLKTIADAIGMHEST ISRVTSNKYMATPRGIFELKYFFSSAISATEGGDAHSAEAVRHRIKQMIDAESPDDILSD DTIVKRLKDDGVDIARRTVAKYREAMHLGSSVQRRREKKGLS NT seq 1569 nt NT seq  +upstreamnt  +downstreamnt atggcaatctcgaccaagcttgagatgcggcaaagccagtcgctgatcatgacgccgcag ctcatgcaggcgatcaagctgctgcaaatgtccaatctcgatctggttgcctatgtggag gcggaactggagcgtaaccccttgctggagcgcacggaaagtggcgacggcactggggcg gccgacgggcagggcggtgaccacgatggcgcctccgatgcatccggcggggatgatttc gaggccggcggcggcgagttcagcagcagcgatggtgccccctccgagtggctgaagagc gaccttgagccgcaggccgagagcatcgcgtcgcagatggacaccgacctcggcaacgta tttcccgatgagcccggcgtctccgcggcgccggaaccggcttcgcttctgggcatcgac agccaccgggcgagcagctcggcctcctccgaggactataatctcgaagccttcgtggcg gaggaagaatccctcattcaggtgctgatggaccagatgcatctggcctttgccgatgcg gtggacaagatcatcggccagcacctgatcaacagcctcgatgaaaacggctatctgcag ctcgatctggaggaagccgctgcgcagctcggcattcctgcggcccgcatcgaggccgtt cttgccgtgatgcaggggtttgagccctccggcgtctttgcccgttcgctggccgagtgc ctggccctccagctgaaggagcgcaaccgcttcgacccggcgatggaagccatgatcgct cacatcgagctgctggcgcgccatgactatccggcgctgcgccgcatctgcggcgtggat gaggaagaccttgccgacatgatcgccgagatcaaggcgctggacccgaggcctggccgc gcctatggctcgtccatcgtgcagccgatggtgccggacgtgctggtgcgccctgcctct gacggcggctggacggtggaactgaacaccgaaacactgccgcgtgtgctggtgaaccag acctatttcgcctccatcacccgcacggctcgcaacgagaccgagcgcagctatctgacc gattgcctgcagacagcgaactggctggtgaagagcctcgaccagcgggccaagaccatc ctcaaggttgcgaccgaaatcgtgcgtcagcaggacggcttcctgacctatggcatcgag cacctgcggccgctgaacctcaagaccattgccgatgccatcggcatgcatgaatccacg atcagccgtgtcacctcaaacaagtacatggcaacgccgcgcggcatcttcgagctgaag tatttcttctcttccgccatctcggcgacggaagggggcgatgcccattcggcggaggcg gtgcgccatcgcatcaagcagatgatcgatgccgaatcgccggacgatatactttccgac gacacgatcgtgaagcgcctcaaggacgacggcgtggacatcgcccgtcgcactgtggcc aaataccgcgaggccatgcacctcggctcttccgtgcaaagacgcagggaaaagaagggc ttgtcctga

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