Pannonibacter phragmitetus: APZ00_04305
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Entry
APZ00_04305 CDS
T04214
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pphr
Pannonibacter phragmitetus
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pphr03016
]
APZ00_04305
Enzymes [BR:
pphr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
APZ00_04305
Transfer RNA biogenesis [BR:
pphr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
APZ00_04305
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ALV26396
UniProt:
A0A0U3PFH7
LinkDB
All DBs
Position
complement(903197..903817)
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AA seq
206 aa
AA seq
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MTIRYHKHDLPDLSHYEGVEAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQK
SAPNLARLFTDPAKVKIFHFARFDLAVLYQYLGITVSPVWCTKIASKLVRTYTDRHGLKD
ITRELVGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALRAQLQMMLEREERTGFAQ
ACFEFLPTRARLDLLGWEEQDIFAHS
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgttaccataagcacgacctgcccgatctgtcccactacgagggtgtggag
gccgtggctgtggacacggaaaccctgggtctcaacccgcaccgcgaccggctctgcgtg
gtgcagctgtcgcccggcgatggcacggcggatgtggtgcagatcgcccggggccagaaa
tcggcgccgaatctcgcccgcctcttcaccgatccggccaaggtgaagattttccacttc
gcccgcttcgatctggcggtactctaccagtatctcggcatcaccgtgtcgccggtctgg
tgcaccaagattgcttccaagctggtgcgcacctacacggaccggcacggcctgaaggac
atcacccgtgagctggtgggtgtggacctgtcgaagcagcagcagagctcggactgggcg
gctgaaacgctgacggatgcgcagcttgcctatgcggcttccgacgtgctgcaccttcat
gcgctgcgcgcccagctgcagatgatgctggagcgtgaagagcgcaccggttttgcgcag
gcctgttttgagttcctgcccacccgtgcaaggcttgatctgcttggctgggaagaacag
gatatttttgcacatagctga
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