KEGG   Pannonibacter phragmitetus: APZ00_04305
Entry
APZ00_04305       CDS       T04214                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pphr  Pannonibacter phragmitetus
Brite
KEGG Orthology (KO) [BR:pphr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pphr03016]
    APZ00_04305
Enzymes [BR:pphr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     APZ00_04305
Transfer RNA biogenesis [BR:pphr03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    APZ00_04305
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: ALV26396
UniProt: A0A0U3PFH7
LinkDB
Position
complement(903197..903817)
AA seq 206 aa
MTIRYHKHDLPDLSHYEGVEAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQK
SAPNLARLFTDPAKVKIFHFARFDLAVLYQYLGITVSPVWCTKIASKLVRTYTDRHGLKD
ITRELVGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALRAQLQMMLEREERTGFAQ
ACFEFLPTRARLDLLGWEEQDIFAHS
NT seq 621 nt   +upstreamnt  +downstreamnt
atgaccatccgttaccataagcacgacctgcccgatctgtcccactacgagggtgtggag
gccgtggctgtggacacggaaaccctgggtctcaacccgcaccgcgaccggctctgcgtg
gtgcagctgtcgcccggcgatggcacggcggatgtggtgcagatcgcccggggccagaaa
tcggcgccgaatctcgcccgcctcttcaccgatccggccaaggtgaagattttccacttc
gcccgcttcgatctggcggtactctaccagtatctcggcatcaccgtgtcgccggtctgg
tgcaccaagattgcttccaagctggtgcgcacctacacggaccggcacggcctgaaggac
atcacccgtgagctggtgggtgtggacctgtcgaagcagcagcagagctcggactgggcg
gctgaaacgctgacggatgcgcagcttgcctatgcggcttccgacgtgctgcaccttcat
gcgctgcgcgcccagctgcagatgatgctggagcgtgaagagcgcaccggttttgcgcag
gcctgttttgagttcctgcccacccgtgcaaggcttgatctgcttggctgggaagaacag
gatatttttgcacatagctga

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