Pannonibacter phragmitetus: APZ00_05610
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Entry
APZ00_05610 CDS
T04214
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pphr
Pannonibacter phragmitetus
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_05610
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APZ00_05610
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
APZ00_05610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
HTH_15
GspH
Motif
Other DBs
NCBI-ProteinID:
ALV26622
UniProt:
A0A0U3FKB1
LinkDB
All DBs
Position
complement(1186466..1189609)
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AA seq
1047 aa
AA seq
DB search
MAARIFSIPPSADFSRELIAALVDGRLIEGFRPLDDPLLLSDVTLYLPTRRAARALPALV
QEMFGGRPVLLPRIRPLGDADEDLQLLSAPGDGEALPPELPPLERKLAMTRLVMGWKAAL
RRQVLALGEDEPLGLPASAADAAWLAGDLITLMDELETEEADWSALASLVPEDHARYWQV
TLEFLDIVRLAWPAYLAECGAMDPKARRSALIRREAERLRLNPPKGPVIAAGSTGTVPAT
AELLKAIADLPQGAIVLPGLDMRMDDASWAALGRAPQRRVTAAGKALPQDEPSANGHPQY
GLKQLLDRLGVDRREVTPLCPPETPQLAAREALVSEALRPASTTDAWTSFLQQTPAEERK
AALDGVELVIARNEAEEALSLAIALREAVERGRTAALVSPDRLLARRVAEELGRWNITVD
DSAGRPLDQTPPAVLAMLAARLALEGCAPLDLLALLKHPLARLGLETKDIRSAARSLERG
VLRGPAPKFGSRGLPDAIAAARLAAEDAHTPRWKKLVEEDWAAVSDLANRLIAALEPLEC
LLERKEPVPVDELARAHARVLQQIAGDPTGSDAELYRGETGDALALMLTGLMDSSRAGLA
VPAREWPSVFAALIAGTAVRRRLPGDPRVQILGPMEARLQRPDLVILGGLNEGIWPQRTR
NDPWLNRPMKRDMGLEPPERRIGAGAHDFVQGLGARRVILSRASRADGAPSVTSRWLQRL
LTLAGPEAEAALLERGRRWTELAGLLDLAEGPVTPAERPAPKPPLSARPVRLSVTEIERL
VRDPYAIFARRILGLEPVDPIGGSPTLADKGSIIHDALALFLSEWHGDLDHKAVARLVEI
GAELFAPLDAFPAIRALWWPRFLRIAEEFVAFERQREPSIRQRFLEISGGVELTLPGAEF
RLTGRADRIDLMQDGTLAVIDYKTGAVPSIKQVEALLSPQLPLEVAMIRRGGFGSVPAGD
PVSDMLYIELKGGRTALKVESRQPKDRTIEELAEDAWKRLEQLVAAYQDEGRGYLSRARV
EKERDLNGPYDHLARVKEWASGSEDSE
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggattttctccattccgccctcggcggatttttcccgggagctgatcgca
gcgctggtggacgggcggctgatcgagggcttccgcccactggatgatccgctgctgctc
tccgatgtcaccctctatctgccgacccgccgcgccgcccgtgccctgcccgcgctggtg
caggaaatgttcggcggccggcccgtgctgctgccgcgcatccgccccttgggcgatgcg
gatgaggacctgcagcttctctccgcccccggtgacggcgaggcgctgccacccgaactg
ccgccgctggagcgcaagctggcgatgacccggctggtgatgggctggaaggcggccctg
cgccgtcaggttctggcccttggcgaagacgagccgctgggccttcctgcttccgccgcc
gatgccgcatggctggccggtgacctcatcaccctgatggacgaactggaaacagaggaa
gcggactggtcggcgctcgccagcctcgtgccggaggatcacgcccgctactggcaggtg
acgctggaattcctcgatatcgtgcgccttgcctggccggcctatctggccgaatgcggc
gcaatggaccccaaggcccgccggtcggcgctgatccggcgtgaggcagagcgcctgcgc
ctcaatccgccgaagggccccgtcattgccgccggatcgaccggcaccgtgcctgccacc
gccgagctgctgaaagccattgcagacctgccgcagggcgccatcgtgctgccggggctg
gacatgcgcatggatgacgcctcctgggccgcccttggccgcgccccgcagcggcgggtg
actgcagcaggcaaggctttgccgcaggacgagcccagcgccaacggccacccgcaatat
ggcctgaaacagctgctcgaccggctgggcgtagaccggcgtgaggtgacgccgctctgc
ccgccggaaaccccacagctcgccgcccgtgaggcgctggtgagcgaagcgctgcgcccg
gcttccaccaccgacgcatggacctccttcctgcaacagaccccggcagaggagcgcaag
gccgcccttgacggggtggaactggtgatcgcccggaacgaagcggaggaagccctcagc
cttgccatagccctgcgcgaggcggtggagcgcggcaggacggcagccctcgtgtccccc
gaccgcctgctcgcccgccgcgtggcggaggaactgggccgctggaacatcaccgtggac
gacagcgcaggacgcccgctcgaccagacgccgcccgccgtgctggcgatgctggccgca
cgccttgcactggaaggctgcgcgccgctggatcttctcgccctgctgaagcatccgctg
gcccgattggggctggagacaaaagacatccgctccgccgcccgctcgctggagcgcggt
gtgcttcgcgggcctgcgccgaaattcggctctcgcgggctgcctgatgcgattgccgct
gcccgccttgcggccgaagatgcccatacaccgcgctggaagaagctggtggaagaggac
tgggccgcagtcagtgatcttgccaaccggctgattgcggcgctggagccgctggaatgc
ctgctggagcggaaagaacccgttcccgtcgatgaactcgcccgtgcccatgccagggtg
ctgcaacagattgctggcgaccccaccggctcggatgcggagctttaccggggcgagacg
ggcgatgcactggcgctgatgctgaccgggctgatggacagcagccgtgctggccttgcc
gtgcctgcccgcgaatggccctcagtcttcgccgcactgattgccggaaccgccgtgcgc
cgccgcctgccgggcgatccgcgggtgcagatcctcggcccgatggaagcgcgcctgcag
cggccggatctggtcattctcggcgggctcaatgaaggcatctggccgcagcgcacccgc
aacgatccctggctgaaccggccgatgaagcgtgacatggggctggagccgccggagcgg
cgcatcggggctggcgcccatgacttcgtgcaagggctgggggcacgccgggtgatcctc
tcccgtgccagccgcgccgatggcgcgcccagcgttacctcccgctggctgcaaaggctg
ctgacgcttgccgggcctgaggcggaagctgccttgctggaacgcgggcggcgctggacg
gagctcgccggcctccttgatcttgccgaaggccccgttaccccggcggaacggcctgcc
ccgaagccgccgctgagcgcaagaccggtgcgcctctccgtcaccgaaatcgaacggctg
gtgcgtgatccttacgccatcttcgcccgccgcatcctcggtctggaacccgtggacccc
atcggcggctcgccgacgctggcggacaagggctcgatcatccatgacgcgctggcgctg
ttcctgtccgaatggcacggcgatctggaccataaggccgtggcgcggctggtcgaaatc
ggcgcggagctgtttgccccgctggatgcgttccccgccatccgcgccctgtggtggccg
cgcttcctgcgcattgccgaggaattcgtggcctttgaacgccagcgcgagccatccatc
cgccagcgtttcctggaaatttccggcggcgtcgaactgacattgccgggtgcagaattc
cggctcacgggccgcgccgaccgcatcgatctgatgcaggacggcacgctggcggtgatc
gactacaagaccggcgccgtgcccagcatcaaacaggtggaagcgctgctctcgccgcag
ctgccgctggaagtcgccatgatccggcggggcggctttggcagcgtgcctgcgggcgat
ccggtgtccgatatgctctacatcgagctgaagggtgggcgcacggcgctgaaggtggaa
tcacgccagccgaaggaccgcaccatcgaggaactggcggaagatgcctggaagcggctg
gaacagctggtggcggcatatcaggatgagggacgcggctatctctcccgcgcaagggtg
gagaaggagcgcgacctcaacggcccctatgatcaccttgcccgggtgaaggaatgggcc
agcggttcggaggacagcgaatga
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