Pannonibacter phragmitetus: APZ00_07475
Help
Entry
APZ00_07475 CDS
T04214
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ00_07475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_07475
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_07475
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APZ00_07475
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APZ00_07475
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APZ00_07475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ALV26938
UniProt:
A0A0U2W2Z0
LinkDB
All DBs
Position
complement(1601108..1602892)
Genome browser
AA seq
594 aa
AA seq
DB search
MFGYPSFRGRQREVVDTLIAGDDAVVLFPTGAGKSMCFQIPALCRPGTGVVISPLIALMK
DQVGALTGAGVRAAALNSSVPPEEQARIAADLRNGTLDFLYVTPERVATAGFSRLLDGAA
ISLFAIDEAHCVSQWGHDFRPEYLQLASLADRYPGVPRVALTATADPHTQEDIRVRLKLE
TAQVFTTSFDRPNIRYEIVERVNQRQQLLDFLKRHKGESGIVYCLSRAKVEDIAGWLTEK
GIRALPYHAGLDREIREANQDAFLLEENLVLVATVAFGMGIDKPDVRFVAHLDLPSSVEA
YYQETGRASRDGAPAEAWMAYGMADMVQRRRMIAEGEAPEEVKRAETAKLNALVGICETA
GCRRQALLAHFGETYPKPCGNCDTCLSPVETWDGTEAAAKFLSAIYRTGQRFGAGHVIDV
LLGKENDKISRFGHDKLSVYGIGKELSPKTWQSVARQLVAMGLVGVDHANYGALVLTDEC
RAVFRNERKVLLRRDRAAASLKASRGERSASLADDLDPEDRLLFERLRRLRTQIARENEV
PPYVVFPDATLAGIAIARPVTSHALLAVSGVGQSKLDRYGSQIIDLVEAFEAGV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
gtgttcggctaccccagtttccgcggccgccagcgcgaggtggtggacacgctgatcgcc
ggggacgatgcagtggtgctgttccccacaggcgcgggcaaatccatgtgcttccagatc
cccgcgctctgccgccccggcacaggtgtggtgatctctcccctcattgcgctgatgaag
gatcaggtgggtgcgctgacgggtgcgggcgtgcgcgctgccgcgctcaattcctccgtt
ccacctgaagagcaggcgcgcattgccgcagacctgcgcaacggcacgctggattttctc
tatgtgacgcccgaacgggtggcgacggccggtttctcccgcctcctggatggtgcggcc
atctcgctctttgccatcgacgaggcccattgcgtcagccagtgggggcatgatttccgg
cccgaatatctgcagctggccagccttgcggaccgttatcccggtgtgccgcgtgtggcg
ctgaccgccaccgccgatccgcatacgcaggaggacatccgcgtccggctgaagctggag
acggcgcaggtcttcaccacttccttcgaccggcccaacatccgctacgagatcgtcgag
cgggtgaaccagcgccagcagctgctggatttcctcaagcgccacaagggcgagagcggc
atcgtctattgcctgtcccgcgccaaggtggaggacatcgccggctggctgacggagaag
ggcatccgcgccctgccctatcacgccgggctcgaccgggagatccgcgaggccaatcag
gatgctttcctgctggaggaaaacctcgtgctggtggcgaccgttgctttcggcatgggc
atcgacaagccggatgtgcgtttcgttgcccatctcgacctgccgtcttccgtcgaggcc
tattatcaggaaaccggacgtgccagccgtgacggcgcgccggccgaagcctggatggcc
tatggcatggccgacatggtgcagcgccggcgcatgattgccgaaggcgaagcgccggaa
gaggtgaagcgggcagaaaccgccaagctcaacgcccttgtcggcatctgcgaaaccgcc
gggtgccgccgtcaggcgctgctggcccatttcggcgagacctatcccaagccttgcggc
aactgcgacacatgcctgtctccggtggaaacctgggacggaacggaagctgccgccaag
ttcctctccgccatctaccgcaccggccagcgctttggcgcaggccatgtgatcgacgtg
ctgctgggcaaggaaaacgacaagatctcccgcttcggccacgacaagctgtcggtctat
ggcatcggcaaggagctttcgcccaagacctggcaatcggtggcgcgccagctggtcgcc
atgggccttgtcggcgtcgatcatgccaactacggcgcgctggtgctgacggacgaatgc
cgcgccgtgttccgcaacgagcgcaaggtgctgctgcgccgcgaccgcgccgccgccagc
ctcaaggcttcgcgcggggagcggtcggccagccttgccgatgatcttgacccggaagac
cggctgctgttcgagcgtctgcgccgcctgcgcacccagatcgcccgggaaaacgaagtg
ccgccctatgtggtgttcccggacgcgacccttgccggcatcgccatcgcccggcccgtg
acctcccatgcccttctcgccgtctccggcgtcggccagtcgaaactcgaccgctacggc
tcgcagatcatcgatctggtcgaggcctttgaagcgggcgtgtga
DBGET
integrated database retrieval system
